Basic Information:

  VIRBase ID:  

VHID00705406

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:  MIMAT0006017          FOXP4:  NM_001012427     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-3p	FOXP4
miRBase Accession/Entrez ID	MIMAT0006017	116113
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	hFKHLA

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FOXP4	chr6:41563851(+) A-I      intronic chr6:41524336(+) A-I      intronic chr6:41524324(+) A-I      intronic chr6:41524269(+) A-I      intronic chr6:41569466(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FOXP4	chr6:41550698(+) A-C intron -    22484847 chr6:41569466(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FOXP4	chr6:41514281-41514282(+) m6A 5'UTR       24209618//25456834//27371828 chr6:41514360-41514361(+) m6A 5'UTR       24209618//25456834//24981863//27371828//27773536 chr6:41514601-41514602(+) m6A 5'UTR       24209618 chr6:41533522-41533523(+) m6A CDS       24209618//22575960 chr6:41533606-41533607(+) m6A CDS       24209618 chr6:41533649-41533650(+) m6A CDS       24209618 chr6:41555105-41555106(+) m6A CDS       - chr6:41555129-41555130(+) m6A CDS       24284625 chr6:41555217-41555218(+) m6A CDS       24284625 chr6:41555246-41555247(+) m6A CDS       24284625//24981863 chr6:41555546-41555547(+) m6A CDS       24981863 chr6:41555572-41555573(+) m6A CDS       24981863 chr6:41557704-41557705(+) m6A CDS//intron       24284625//24981863 chr6:41557755-41557756(+) m6A CDS       24981863 chr6:41558970-41558971(+) m6A CDS       24284625 chr6:41559043-41559044(+) m6A CDS       24284625 chr6:41562679-41562680(+) m6A CDS       24284625 chr6:41562711-41562712(+) m6A CDS       24284625 chr6:41564933-41564934(+) m6A CDS       24284625 chr6:41565570-41565571(+) m6A CDS       24284625 chr6:41566570-41566571(+) m6A CDS       24284625//25456834//24981863 chr6:41566630-41566631(+) m6A CDS       24284625//25456834//24981863 chr6:41566636-41566637(+) m6A CDS       24284625//25456834//24981863 chr6:41566664-41566665(+) m6A CDS       24284625//25456834//24981863 chr6:41566706-41566707(+) m6A 3'UTR       24284625//25456834//24981863 chr6:41566781-41566782(+) m6A 3'UTR       24284625//25456834//24981863 chr6:41566787-41566788(+) m6A 3'UTR       24284625//25456834//24981863 chr6:41566832-41566833(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr6:41566867-41566868(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr6:41566886-41566887(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr6:41566897-41566898(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr6:41566912-41566913(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr6:41566924-41566925(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr6:41566942-41566943(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr6:41567024-41567025(+) m6A 3'UTR       24284625//24209618 chr6:41567054-41567055(+) m6A 3'UTR       24284625//24209618 chr6:41567161-41567162(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr6:41567205-41567206(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr6:41567229-41567230(+) m6A 3'UTR       24284625//25456834//24981863 chr6:41567255-41567256(+) m6A 3'UTR       24284625//25456834//24981863 chr6:41567307-41567308(+) m6A 3'UTR       24284625//25456834 chr6:41567325-41567326(+) m6A 3'UTR       24284625//25456834 chr6:41567330-41567331(+) m6A 3'UTR       24284625//25456834 chr6:41567521-41567522(+) m6A 3'UTR       24284625 chr6:41567670-41567671(+) m6A 3'UTR       24284625//24209618//24981863 chr6:41567694-41567695(+) m6A 3'UTR       24284625//24209618//24981863 chr6:41567700-41567701(+) m6A 3'UTR       24284625//24209618//24981863 chr6:41567807-41567808(+) m6A 3'UTR       24209618//24981863 chr6:41567839-41567840(+) m6A 3'UTR       24209618 chr6:41567876-41567877(+) m6A 3'UTR       24209618 chr6:41568038-41568039(+) m6A 3'UTR       24284625//25456834//24981863 chr6:41568051-41568052(+) m6A 3'UTR       24284625//25456834//24981863 chr6:41568111-41568112(+) m6A 3'UTR       24284625//25456834//24981863//27773535 chr6:41568122-41568123(+) m6A 3'UTR       24284625//25456834//24981863//27773535 chr6:41568136-41568137(+) m6A 3'UTR       24284625//25456834//24981863//27773535 chr6:41568157-41568158(+) m6A 3'UTR       24284625//25456834//24981863//27773535 chr6:41568211-41568212(+) m6A 3'UTR       24284625//24981863 chr6:41568233-41568234(+) m6A 3'UTR       24284625//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FOXP4	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hiv1-miR-TAR-3p	l-685,458       5479543 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-3p
Interactor2: FOXP4

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg