Basic Information:

  VIRBase ID:  

VHID00705243

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:  MIMAT0006017          ZSWIM1:  NM_080603     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-3p	ZSWIM1
miRBase Accession/Entrez ID	MIMAT0006017	90204
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C20orf162

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZSWIM1	chr20:44513563(+) A-I      3'UTR chr20:44513500(+) A-I      3'UTR chr20:44513557(+) A-I      3'UTR chr20:44513489(+) A-I      3'UTR chr20:44513490(+) A-I      3'UTR chr20:44513261(+) A-I      3'UTR chr20:44510729(+) A-I      intronic chr20:44513082(+) A-I      3'UTR chr20:44513395(+) A-I      3'UTR chr20:44513024(+) A-I      3'UTR chr20:44513654(+) A-I      3'UTR chr20:44513394(+) A-I      3'UTR chr20:44513232(+) A-I      3'UTR chr20:44513128(+) A-I      3'UTR chr20:44513488(+) A-I      3'UTR chr20:44513448(+) A-I      3'UTR chr20:44513540(+) A-I      3'UTR chr20:44513131(+) A-I      3'UTR chr20:44513585(+) A-I      3'UTR chr20:44513638(+) A-I      3'UTR chr20:44513400(+) A-I      3'UTR chr20:44513386(+) A-I      3'UTR chr20:44513262(+) A-I      3'UTR chr20:44513474(+) A-I      3'UTR chr20:44513531(+) A-I      3'UTR chr20:44513263(+) A-I      3'UTR chr20:44513572(+) A-I      3'UTR chr20:44513275(+) A-I      3'UTR chr20:44513141(+) A-I      3'UTR chr20:44513503(+) A-I      3'UTR chr20:44513536(+) A-I      3'UTR chr20:44513595(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ZSWIM1	chr20:44513168(+) A-I intron -    21960545 chr20:44513263(+) A-G intron -    21725310 chr20:44513595(+) A-G intron -    21725310   //22484847 chr20:44513024(+) A-G intron -    22484847 chr20:44513027(+) A-G intron -    22484847 chr20:44513395(+) A-G intron -    22484847 chr20:44513463(+) A-G intron -    22484847 chr20:44513464(+) A-G intron -    22484847 chr20:44513474(+) A-G intron -    22484847 chr20:44513503(+) A-G intron -    22484847 chr20:44513530(+) A-G intron -    22484847 chr20:44513531(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZSWIM1	chr20:44511242-44511243(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:44511300-44511301(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:44511355-44511356(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:44511393-44511394(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr20:44511480-44511481(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085 chr20:44511527-44511528(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr20:44511592-44511593(+) m6A CDS       24284625//24981863//22608085 chr20:44512058-44512059(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr20:44512096-44512097(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:44512105-44512106(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:44512114-44512115(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:44512141-44512142(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:44512159-44512160(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:44512181-44512182(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:44512321-44512322(+) m6A CDS       24284625//24981863//22608085 chr20:44512326-44512327(+) Cm CDS       - chr20:44512507-44512508(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:44512536-44512537(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:44512643-44512644(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr20:44512692-44512693(+) Y 3'UTR       26075521 chr20:44512822-44512823(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr20:44512828-44512829(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr20:44512837-44512838(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr20:44512901-44512902(+) m6A 3'UTR       25456834//24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ZSWIM1	Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hiv1-miR-TAR-3p	l-685,458       5479543 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-3p
Interactor2: ZSWIM1

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg