Detail Information

Basic Information:


  VIRBase ID:  

VHID00704739

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:           TRAK2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hiv1-miR-TAR-3p TRAK2
miRBase
Accession/Entrez ID		 MIMAT0006017 66008
Organism Human immunodeficiency virus 1 (HIV-1) Homo sapiens
Category miRNA mRNA
Alias - ALS2CR3//CALS-C//GRIF-1//GRIF1//MILT2//OIP98

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TRAK2
chr2:202307032(-) A-I      intronic
chr2:202306992(-) A-I      intronic
chr2:202300032(-) A-I      intronic
chr2:202306892(-) A-I      intronic
chr2:202299975(-) A-I      intronic
chr2:202314975(-) A-I      intronic
chr2:202287906(-) A-I      intronic
chr2:202315060(-) A-I      intronic
chr2:202315016(-) A-I      intronic
chr2:202314547(-) A-I      intronic
chr2:202306543(-) A-I      intronic
chr2:202314544(-) A-I      intronic
chr2:202315136(-) A-I      intronic
chr2:202314883(-) A-I      intronic
chr2:202306552(-) A-I      intronic
chr2:202306965(-) A-I      intronic
chr2:202314485(-) A-I      intronic
chr2:202314632(-) A-I      intronic
chr2:202306597(-) A-I      intronic
chr2:202306857(-) A-I      intronic
chr2:202314994(-) A-I      intronic
chr2:202306594(-) A-I      intronic
chr2:202314368(-) A-I      intronic
chr2:202307067(-) A-I      intronic
chr2:202306652(-) A-I      intronic
chr2:202314455(-) A-I      intronic
chr2:202307066(-) A-I      intronic
chr2:202299778(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TRAK2
chr2:202306513(-) A-G intron -    22484847
chr2:202306652(-) A-G intron -    22484847
chr2:202306924(-) A-G intron -    22484847
chr2:202306965(-) A-G intron -    22484847
chr2:202307066(-) A-G intron -    22484847
chr2:202314368(-) A-G intron -    22484847
chr2:202314455(-) A-G intron -    22484847
chr2:202314485(-) A-G intron -    22484847
chr2:202314994(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TRAK2
chr2:202244416-202244417(-) m6A 3'UTR       27773535
chr2:202244468-202244469(-) m6A 3'UTR       27773535
chr2:202244895-202244896(-) m6A 3'UTR       27773535
chr2:202244938-202244939(-) m6A 3'UTR       24981863//27773535
chr2:202244955-202244956(-) m6A 3'UTR       24981863//27773535
chr2:202244994-202244995(-) m6A 3'UTR       24981863//27773535
chr2:202245203-202245204(-) m6A 3'UTR       24209618//24981863//26404942//27773535//22608085
chr2:202245269-202245270(-) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//27773535//22608085
chr2:202245361-202245362(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:202245409-202245410(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:202245464-202245465(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:202245490-202245491(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:202245503-202245504(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:202245512-202245513(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:202245542-202245543(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:202245553-202245554(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:202245582-202245583(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:202245725-202245726(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr2:202245781-202245782(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr2:202245856-202245857(-) m6A CDS       24284625//24209618//24981863//27773535
chr2:202248899-202248900(-) m6A CDS       27773535
chr2:202250950-202250951(-) m6A CDS       27773535
chr2:202251010-202251011(-) m6A CDS       27773535
chr2:202252493-202252494(-) m6A CDS       27773535
chr2:202252574-202252575(-) m6A CDS       27773535
chr2:202252637-202252638(-) m6A CDS       27773535//27371828
chr2:202252696-202252697(-) m6A CDS       27371828
chr2:202254052-202254053(-) m6A CDS       27773535
chr2:202254528-202254529(-) m6A CDS       27773535
chr2:202254575-202254576(-) m6A CDS       27773535
chr2:202275512-202275513(-) m6A intron       -
chr2:202275557-202275558(-) m6A intron       -
chr2:202275609-202275610(-) m6A intron       -
chr2:202275628-202275629(-) m6A intron       -
chr2:202275677-202275678(-) m6A intron       -
chr2:202275683-202275684(-) m6A intron       -
chr2:202275838-202275839(-) m6A intron       -
chr2:202275893-202275894(-) m6A intron       -
chr2:202275902-202275903(-) m6A intron       -
chr2:202275913-202275914(-) m6A intron       -
chr2:202275946-202275947(-) m6A intron       -
chr2:202275988-202275989(-) m6A intron       -
chr2:202276006-202276007(-) m6A intron       -
chr2:202316080-202316081(-) m6A 5'UTR//exon       24981863
chr2:202316247-202316248(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TRAK2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hiv1-miR-TAR-3p
l-685,458       5479543
Pha-665752       10461815

Interaction Network (The top 100 interactions):


Interactor1: hiv1-miR-TAR-3p
Interactor2: TRAK2

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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