Basic Information:

  VIRBase ID:  

VHID00703063

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:  MIMAT0006017          TMCC2:  NM_001375652     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-3p	TMCC2
miRBase Accession/Entrez ID	MIMAT0006017	9911
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HUCEP11

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TMCC2	chr1:205203427(+) A-I      intronic chr1:205204007(+) A-I      intronic chr1:205224664(+) A-I      intronic chr1:205203987(+) A-I      intronic chr1:205212391(+) A-I      intronic chr1:205203970(+) A-I      intronic chr1:205203390(+) A-I      intronic chr1:205212369(+) A-I      intronic chr1:205212365(+) A-I      intronic chr1:205204064(+) A-I      intronic chr1:205232673(+) A-I      intronic chr1:205230402(+) A-I      intronic chr1:205224207(+) A-I      intronic chr1:205198500(+) A-I      intronic chr1:205224210(+) A-I      intronic chr1:205200518(+) A-I      intronic chr1:205200627(+) A-I      intronic chr1:205218351(+) A-I      intronic chr1:205215004(+) A-I      intronic chr1:205230782(+) A-I      intronic chr1:205215124(+) A-I      intronic chr1:205224671(+) A-I      intronic chr1:205230726(+) A-I      intronic chr1:205232699(+) A-I      intronic chr1:205224204(+) A-I      intronic chr1:205232751(+) A-I      intronic chr1:205200473(+) A-I      intronic chr1:205232737(+) A-I      intronic chr1:205224076(+) A-I      intronic chr1:205201932(+) A-I      intronic chr1:205230727(+) A-I      intronic chr1:205200597(+) A-I      intronic chr1:205215157(+) A-I      intronic chr1:205224220(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMCC2	chr1:205197424-205197425(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085 chr1:205197479-205197480(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085 chr1:205197599-205197600(+) m6A 5'UTR       24284625//24209618//24981863//22608085 chr1:205197662-205197663(+) m6A 5'UTR       24284625 chr1:205197786-205197787(+) m6A CDS       24284625 chr1:205197803-205197804(+) m6A CDS       24284625 chr1:205211035-205211036(+) m6A CDS//exon       24284625 chr1:205211167-205211168(+) m6A CDS//exon       24284625 chr1:205215626-205215627(+) m6A 5'UTR//intron       24284625 chr1:205226479-205226480(+) m6A exon//intron       24284625 chr1:205238090-205238091(+) m6A CDS//exon//intron       24284625 chr1:205238171-205238172(+) m6A CDS//exon//intron       24284625//24981863 chr1:205238182-205238183(+) m6A CDS//exon//intron       24284625//24981863 chr1:205238286-205238287(+) m6A CDS//exon//intron       24284625//24981863//22608085 chr1:205238303-205238304(+) m6A CDS//exon//intron       24284625//25456834//24981863//22608085 chr1:205238348-205238349(+) m6A CDS//exon//intron       24284625//25456834//24981863//22608085 chr1:205238365-205238366(+) m6A CDS//exon//intron       24284625//25456834//24981863//22608085 chr1:205238465-205238466(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr1:205238669-205238670(+) m6A CDS//exon//intron       24284625//25456834//22608085 chr1:205238873-205238874(+) m6A CDS//exon//intron       24284625//25456834//24981863//22608085 chr1:205238916-205238917(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr1:205238933-205238934(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr1:205238945-205238946(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr1:205238953-205238954(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr1:205238969-205238970(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr1:205240309-205240310(+) m6A CDS//exon       - chr1:205240375-205240376(+) m6A CDS//exon       - chr1:205241141-205241142(+) m6A CDS//exon       24284625 chr1:205241208-205241209(+) m6A CDS//exon       24284625//25456834 chr1:205241314-205241315(+) m6A 3'UTR//exon       24284625//25456834 chr1:205241322-205241323(+) m6A 3'UTR//exon       24284625//25456834 chr1:205241357-205241358(+) m6A 3'UTR//exon       24284625//25456834 chr1:205241499-205241500(+) m6A 3'UTR//exon       24284625//25456834 chr1:205241541-205241542(+) m6A 3'UTR//exon       24284625//25456834 chr1:205241582-205241583(+) m6A 3'UTR//exon       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMCC2	Chromatin K562 cells     - Exosome Blood     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hiv1-miR-TAR-3p	l-685,458       5479543 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-3p
Interactor2: TMCC2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg