Basic Information:

  VIRBase ID:  

VHID00702349

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:  MIMAT0006017          RPL19:  NM_000981     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-3p	RPL19
miRBase Accession/Entrez ID	MIMAT0006017	6143
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	L19

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RPL19	chr17:37358103(+) A-I      intronic chr17:37358339(+) A-I      intronic chr17:37358273(+) A-I      intronic chr17:37358257(+) A-I      intronic chr17:37358249(+) A-I      intronic chr17:37358117(+) A-I      intronic chr17:37358115(+) A-I      intronic chr17:37358267(+) A-I      intronic chr17:37357955(+) A-I      intronic chr17:37357965(+) A-I      intronic chr17:37358277(+) A-I      intronic chr17:37358335(+) A-I      intronic chr17:37358268(+) A-I      intronic chr17:37358285(+) A-I      intronic chr17:37358294(+) A-I      intronic chr17:37357970(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RPL19	chr17:37356650-37356651(+) m6A 5'UTR//intron       24284625//25456834 chr17:37356665-37356666(+) m6A 5'UTR//intron       24284625//25456834 chr17:37356799-37356800(+) m6A 5'UTR//intron       24284625 chr17:37356878-37356879(+) m6A 5'UTR//intron       - chr17:37356883-37356884(+) m6A 5'UTR//intron       - chr17:37357520-37357521(+) m1A CDS//exon       26863196//26863410 chr17:37357530-37357531(+) Y CDS//exon       25219674 chr17:37357533-37357534(+) m6A CDS//exon       22575960 chr17:37357544-37357545(+) m6A CDS//exon       22575960 chr17:37358321-37358322(+) m6A exon//intron       22575960 chr17:37358344-37358345(+) m6A exon//intron       22575960 chr17:37358356-37358357(+) m6A exon//intron       22575960 chr17:37358653-37358654(+) m6A CDS//exon       27773535//22575960 chr17:37359155-37359156(+) m6A exon//intron       - chr17:37359168-37359169(+) m6A exon//intron       - chr17:37360373-37360374(+) m6A CDS//exon       24981863//27773535//27371828//27773536//22575960 chr17:37360392-37360393(+) m6A CDS//exon       24981863//27773535//27371828//27773536//22575960 chr17:37360415-37360416(+) m6A CDS//exon       24981863//27773535//27371828//27773536//22575960 chr17:37360468-37360469(+) m6A exon//intron       24981863//27773535//27371828//27773536//22575960 chr17:37360478-37360479(+) m6A exon//intron       24981863//27773535//27371828//27773536//22575960 chr17:37360747-37360748(+) m6A exon//intron       24981863//27773535//22575960 chr17:37360805-37360806(+) m6A CDS//exon       24981863//27773535//27371828//22575960 chr17:37360868-37360869(+) m6A CDS//exon       24981863//27773535//27371828//22575960 chr17:37360889-37360890(+) m6A CDS//exon       24981863//27773535//27371828//22575960 chr17:37360902-37360903(+) m6A 3'UTR//exon       24981863//27773535//27371828//22575960 chr17:37360964-37360965(+) m6A 3'UTR//exon       24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RPL19	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hiv1-miR-TAR-3p	l-685,458       5479543 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-3p
Interactor2: RPL19

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg