Basic Information:

  VIRBase ID:  

VHID00702096

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:  MIMAT0006017          NINJ1:  NM_004148     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-3p	NINJ1
miRBase Accession/Entrez ID	MIMAT0006017	4814
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	NIN1//NINJURIN

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NINJ1	chr9:95888055(-) A-I      ncRNA chr9:95888068(-) A-I      ncRNA

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NINJ1	chr9:95883808-95883809(-) m6A 3'UTR//exon       24284625//24981863//27773535 chr9:95883898-95883899(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr9:95883996-95883997(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr9:95884012-95884013(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr9:95884120-95884121(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr9:95884133-95884134(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr9:95884192-95884193(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr9:95884228-95884229(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr9:95884240-95884241(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr9:95884245-95884246(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr9:95884372-95884373(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960 chr9:95884415-95884416(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960 chr9:95887187-95887188(-) m6A 3'UTR//exon       24284625//24209618//27773535//22575960 chr9:95887208-95887209(-) m6A CDS//exon       24284625//24209618//27773535//22575960 chr9:95887301-95887302(-) m6A CDS//exon       24284625//27773535//22575960 chr9:95887441-95887442(-) m6A exon//intron       27773535 chr9:95888788-95888789(-) m6A CDS//exon       24284625 chr9:95888837-95888838(-) m6A CDS//exon       24284625//27371828//27773536 chr9:95888879-95888880(-) m6A CDS//exon//intron       24284625//27371828//27773536 chr9:95896486-95896487(-) m6A CDS//exon       24981863//27371828//27773536 chr9:95896494-95896495(-) m6A CDS//exon       24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NINJ1	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hiv1-miR-TAR-3p	l-685,458       5479543 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-3p
Interactor2: NINJ1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg