Basic Information:

  VIRBase ID:  

VHID00701979

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:  MIMAT0006017          LRP4:  NM_002334     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-3p	LRP4
miRBase Accession/Entrez ID	MIMAT0006017	4038
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CLSS//CMS17//LRP-4//LRP10//MEGF7//SOST2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LRP4	chr11:46879556(-) A-I      3'UTR chr11:46937290(-) A-I      intronic chr11:46937289(-) A-I      intronic chr11:46937288(-) A-I      intronic chr11:46929604(-) A-I      intronic chr11:46933466(-) A-I      intronic chr11:46892262(-) A-I      intronic chr11:46937957(-) A-I      intronic chr11:46891737(-) A-I      intronic chr11:46906690(-) A-I      intronic chr11:46929551(-) A-I      intronic chr11:46933461(-) A-I      intronic chr11:46891744(-) A-I      intronic chr11:46929558(-) A-I      intronic chr11:46891818(-) A-I      intronic chr11:46929770(-) A-I      intronic chr11:46891819(-) A-I      intronic chr11:46892099(-) A-I      intronic chr11:46892113(-) A-I      intronic chr11:46892227(-) A-I      intronic chr11:46932321(-) A-I      intronic chr11:46892203(-) A-I      intronic chr11:46933490(-) A-I      intronic chr11:46937793(-) A-I      intronic chr11:46906747(-) A-I      intronic chr11:46883201(-) A-I      intronic chr11:46883205(-) A-I      intronic chr11:46887965(-) A-I      intronic chr11:46888109(-) A-I      intronic chr11:46888304(-) A-I      intronic chr11:46933121(-) A-I      intronic chr11:46888346(-) A-I      intronic chr11:46891692(-) A-I      intronic chr11:46929559(-) A-I      intronic chr11:46891734(-) A-I      intronic chr11:46938428(-) A-I      intronic chr11:46937243(-) A-I      intronic chr11:46905910(-) A-I      intronic chr11:46932297(-) A-I      intronic chr11:46906691(-) A-I      intronic chr11:46907090(-) A-I      intronic chr11:46905898(-) A-I      intronic chr11:46937298(-) A-I      intronic chr11:46933088(-) A-I      intronic chr11:46932307(-) A-I      intronic chr11:46937931(-) A-I      intronic chr11:46906651(-) A-I      intronic chr11:46906675(-) A-I      intronic chr11:46937340(-) A-I      intronic chr11:46933546(-) A-I      intronic chr11:46906362(-) A-I      intronic chr11:46906823(-) A-I      intronic chr11:46923465(-) A-I      intronic chr11:46929753(-) A-I      intronic chr11:46937939(-) A-I      intronic chr11:46932298(-) A-I      intronic chr11:46937859(-) A-I      intronic chr11:46937846(-) A-I      intronic chr11:46926470(-) A-I      intronic chr11:46924876(-) A-I      intronic chr11:46937162(-) A-I      intronic chr11:46929754(-) A-I      intronic chr11:46937879(-) A-I      intronic chr11:46906378(-) A-I      intronic chr11:46906770(-) A-I      intronic chr11:46906579(-) A-I      intronic chr11:46924872(-) A-I      intronic chr11:46909562(-) A-I      intronic chr11:46923456(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LRP4	chr11:46878457-46878458(-) m6A 3'UTR//exon       24981863//27773535 chr11:46878498-46878499(-) m6A 3'UTR//exon       24981863//27773535 chr11:46878564-46878565(-) m6A 3'UTR//exon       24981863//27773535 chr11:46878632-46878633(-) m6A 3'UTR//exon       27773535 chr11:46878851-46878852(-) m6A 3'UTR//exon       - chr11:46878883-46878884(-) m6A 3'UTR//exon       - chr11:46878991-46878992(-) m6A 3'UTR//exon       24981863 chr11:46879029-46879030(-) m6A 3'UTR//exon       24981863 chr11:46879035-46879036(-) m6A 3'UTR//exon       24981863 chr11:46880010-46880011(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22608085 chr11:46880078-46880079(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr11:46880098-46880099(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr11:46880119-46880120(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr11:46880166-46880167(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr11:46880267-46880268(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:46880303-46880304(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr11:46880321-46880322(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr11:46880569-46880570(-) m6A CDS//exon       24284625//25456834//24981863//27773535 chr11:46880582-46880583(-) m6A CDS//exon       24284625//25456834//24981863//27773535 chr11:46880718-46880719(-) m6A CDS//exon       24284625//25456834//24981863//27773535 chr11:46890175-46890176(-) m6A CDS       27773535 chr11:46895040-46895041(-) m6A CDS//exon       - chr11:46895051-46895052(-) m6A CDS//exon       - chr11:46895066-46895067(-) m6A CDS//exon       - chr11:46895088-46895089(-) m6A CDS//exon       - chr11:46895112-46895113(-) m6A CDS//exon       - chr11:46895135-46895136(-) m6A CDS//exon       - chr11:46895212-46895213(-) m6A exon//intron       - chr11:46898179-46898180(-) m6A CDS       - chr11:46898308-46898309(-) m6A CDS       - chr11:46898760-46898761(-) m6A CDS       - chr11:46898781-46898782(-) m6A CDS       - chr11:46900790-46900791(-) Cm CDS       - chr11:46911529-46911530(-) m6A CDS       27773535 chr11:46911546-46911547(-) m6A CDS       27773535 chr11:46911568-46911569(-) m6A CDS       27773535 chr11:46911620-46911621(-) m6A CDS       27773535 chr11:46911634-46911635(-) m6A CDS       27773535 chr11:46916750-46916751(-) m6A CDS       - chr11:46916761-46916762(-) m6A CDS       - chr11:46939957-46939958(-) m6A 5'UTR       27773536 chr11:46940004-46940005(-) m6A 5'UTR       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LRP4	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hiv1-miR-TAR-3p	l-685,458       5479543 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-3p
Interactor2: LRP4

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg