Basic Information:

  VIRBase ID:  

VHID00701815

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:  MIMAT0006017          GSK3A:  NM_019884     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-3p	GSK3A
miRBase Accession/Entrez ID	MIMAT0006017	2931
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GSK3A	chr19:42741419(-) A-I      intronic chr19:42741422(-) A-I      intronic chr19:42741478(-) A-I      intronic chr19:42741504(-) A-I      intronic chr19:42741515(-) A-I      intronic chr19:42741543(-) A-I      intronic chr19:42741825(-) A-I      intronic chr19:42743061(-) A-I      intronic chr19:42743107(-) A-I      intronic chr19:42741345(-) A-I      intronic chr19:42741350(-) A-I      intronic chr19:42741387(-) A-I      intronic chr19:42741408(-) A-I      intronic chr19:42742129(-) A-I      intronic chr19:42742526(-) A-I      intronic chr19:42742143(-) A-I      intronic chr19:42742247(-) A-I      intronic chr19:42742347(-) A-I      intronic chr19:42741448(-) A-I      intronic chr19:42742592(-) A-I      intronic chr19:42741432(-) A-I      intronic chr19:42741514(-) A-I      intronic chr19:42735257(-) A-I      intronic chr19:42742621(-) A-I      intronic chr19:42741449(-) A-I      intronic chr19:42741612(-) A-I      intronic chr19:42741621(-) A-I      intronic chr19:42742942(-) A-I      intronic chr19:42742023(-) A-I      intronic chr19:42735788(-) A-I      intronic chr19:42741383(-) A-I      intronic chr19:42742287(-) A-I      intronic chr19:42742384(-) A-I      intronic chr19:42741613(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GSK3A	chr19:42735264(-) T-C intron -    22484847 chr19:42735361(-) T-C intron -    22484847 chr19:42735433(-) T-C intron -    22484847 chr19:42735437(-) T-C intron -    22484847 chr19:42735444(-) T-C intron -    22484847 chr19:42735850(-) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GSK3A	chr19:42734341-42734342(-) m6A 3'UTR       24209618//28052920//27773535 chr19:42734371-42734372(-) m6A 3'UTR       24209618//28052920//27773535 chr19:42734617-42734618(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535 chr19:42734650-42734651(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535 chr19:42734667-42734668(-) m6A 3'UTR//intron       24981863//27773535 chr19:42734702-42734703(-) m6A 3'UTR//exon//intron       24981863//27773535 chr19:42734724-42734725(-) m6A 3'UTR//exon//intron       24981863//27773535 chr19:42734991-42734992(-) m6A CDS//exon       24284625//24981863//28052920//26404942//27773535 chr19:42735007-42735008(-) m6A CDS//exon       24284625//24981863//28052920//27773535 chr19:42736701-42736702(-) m6A CDS//exon       24284625//24981863//27773535//22575960 chr19:42736717-42736718(-) m6A CDS//exon       24284625//27773535//22575960 chr19:42741061-42741062(-) m6A CDS       - chr19:42744119-42744120(-) m6A CDS       - chr19:42744148-42744149(-) m6A CDS       24209618 chr19:42744156-42744157(-) m6A CDS       24209618 chr19:42744215-42744216(-) m6A CDS       24209618//27371828 chr19:42744409-42744410(-) m6A 5'UTR//intron       27773536 chr19:42746413-42746414(-) m6A CDS       24209618//27371828//27773536 chr19:42746562-42746563(-) m6A CDS       24209618//27371828//27773536//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GSK3A	Chromatin K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hiv1-miR-TAR-3p	l-685,458       5479543 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-3p
Interactor2: GSK3A

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg