Detail Information

Basic Information:


  VIRBase ID:  

VHID00701676

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:           ETF1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hiv1-miR-TAR-3p ETF1
miRBase
Accession/Entrez ID		 MIMAT0006017 2107
Organism Human immunodeficiency virus 1 (HIV-1) Homo sapiens
Category miRNA mRNA
Alias - D5S1995//ERF//ERF1//RF1//SUP45L1//TB3-1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ETF1
chr5:137870868(-) A-I      intronic
chr5:137870841(-) A-I      intronic
chr5:137854157(-) A-I      intronic
chr5:137856340(-) A-I      intronic
chr5:137858450(-) A-I      intronic
chr5:137858506(-) A-I      intronic
chr5:137858514(-) A-I      intronic
chr5:137858531(-) A-I      intronic
chr5:137858573(-) A-I      intronic
chr5:137862772(-) A-I      intronic
chr5:137858578(-) A-I      intronic
chr5:137858583(-) A-I      intronic
chr5:137858632(-) A-I      intronic
chr5:137858657(-) A-I      intronic
chr5:137858893(-) A-I      intronic
chr5:137871328(-) A-I      intronic
chr5:137871302(-) A-I      intronic
chr5:137871288(-) A-I      intronic
chr5:137871226(-) A-I      intronic
chr5:137871216(-) A-I      intronic
chr5:137870819(-) A-I      intronic
chr5:137870817(-) A-I      intronic
chr5:137870777(-) A-I      intronic
chr5:137863200(-) A-I      intronic
chr5:137869256(-) A-I      intronic
chr5:137869231(-) A-I      intronic
chr5:137869212(-) A-I      intronic
chr5:137868832(-) A-I      intronic
chr5:137868796(-) A-I      intronic
chr5:137868740(-) A-I      intronic
chr5:137868694(-) A-I      intronic
chr5:137865602(-) A-I      intronic
chr5:137865559(-) A-I      intronic
chr5:137865545(-) A-I      intronic
chr5:137865539(-) A-I      intronic
chr5:137865535(-) A-I      intronic
chr5:137864633(-) A-I      intronic
chr5:137864619(-) A-I      intronic
chr5:137864575(-) A-I      intronic
chr5:137863660(-) A-I      intronic
chr5:137862722(-) A-I      intronic
chr5:137862379(-) A-I      intronic
chr5:137862294(-) A-I      intronic
chr5:137867546(-) A-I      intronic
chr5:137854077(-) A-I      intronic
chr5:137862267(-) A-I      intronic
chr5:137860209(-) A-I      intronic
chr5:137860147(-) A-I      intronic
chr5:137859154(-) A-I      intronic
chr5:137859141(-) A-I      intronic
chr5:137859111(-) A-I      intronic
chr5:137859093(-) A-I      intronic
chr5:137859030(-) A-I      intronic
chr5:137847813(-) A-I      intronic
chr5:137850025(-) A-I      intronic
chr5:137853648(-) A-I      intronic
chr5:137853882(-) A-I      intronic
chr5:137854134(-) A-I      intronic
chr5:137870778(-) A-I      intronic
chr5:137850196(-) A-I      intronic
chr5:137860228(-) A-I      intronic
chr5:137862382(-) A-I      intronic
chr5:137868767(-) A-I      intronic
chr5:137852812(-) A-I      intronic
chr5:137864691(-) A-I      intronic
chr5:137860120(-) A-I      intronic
chr5:137864591(-) A-I      intronic
chr5:137864710(-) A-I      intronic
chr5:137870859(-) A-I      intronic
chr5:137859607(-) A-I      intronic
chr5:137847842(-) A-I      intronic
chr5:137850370(-) A-I      intronic
chr5:137865475(-) A-I      intronic
chr5:137869262(-) A-I      intronic
chr5:137848989(-) A-I      intronic
chr5:137851031(-) A-I      intronic
chr5:137859775(-) A-I      intronic
chr5:137850369(-) A-I      intronic
chr5:137862256(-) A-I      intronic
chr5:137851070(-) A-I      intronic
chr5:137868766(-) A-I      intronic
chr5:137869266(-) A-I      intronic
chr5:137860405(-) A-I      intronic
chr5:137860130(-) A-I      intronic
chr5:137869120(-) A-I      intronic
chr5:137850031(-) A-I      intronic
chr5:137860185(-) A-I      intronic
chr5:137862324(-) A-I      intronic
chr5:137850345(-) A-I      intronic
chr5:137870822(-) A-I      intronic
chr5:137861046(-) A-I      intronic
chr5:137868896(-) A-I      intronic
chr5:137869299(-) A-I      intronic
chr5:137856324(-) A-I      intronic
chr5:137862755(-) A-I      intronic
chr5:137862322(-) A-I      intronic
chr5:137859930(-) A-I      intronic
chr5:137850326(-) A-I      intronic
chr5:137860195(-) A-I      intronic
chr5:137870731(-) A-I      intronic
chr5:137850223(-) A-I      intronic
chr5:137857398(-) A-I      intronic
chr5:137869292(-) A-I      intronic
chr5:137853826(-) A-I      intronic
chr5:137869132(-) A-I      intronic
chr5:137859995(-) A-I      intronic
chr5:137868847(-) A-I      intronic
chr5:137870867(-) A-I      intronic
chr5:137864592(-) A-I      intronic
chr5:137870750(-) A-I      intronic
chr5:137854080(-) A-I      intronic
chr5:137859101(-) A-I      intronic
chr5:137865658(-) A-I      intronic
chr5:137868856(-) A-I      intronic
chr5:137866457(-) A-I      intronic
chr5:137850040(-) A-I      intronic
chr5:137857353(-) A-I      intronic
chr5:137853661(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ETF1
chr5:137850040(-) A-I intron -    21960545
chr5:137850196(-) A-I intron -    21960545
chr5:137848989(-) A-G intron -    22484847
chr5:137850031(-) A-G intron -    22484847
chr5:137850040(-) A-G intron -    22484847
chr5:137850196(-) A-G intron -    22484847
chr5:137851070(-) A-G intron -    22484847
chr5:137853661(-) A-G intron -    22484847
chr5:137854068(-) A-G intron -    22484847
chr5:137854080(-) A-G intron -    22484847
chr5:137854082(-) A-G intron -    22484847
chr5:137857353(-) A-G intron -    22484847
chr5:137859140(-) A-G intron -    22484847
chr5:137859166(-) A-G intron -    22484847
chr5:137859208(-) A-G intron -    22484847
chr5:137859543(-) A-G intron -    22484847
chr5:137860130(-) A-G intron -    22484847
chr5:137860133(-) A-G intron -    22484847
chr5:137861046(-) A-G intron -    22484847
chr5:137861558(-) A-G intron -    22484847
chr5:137862322(-) A-G intron -    22484847
chr5:137862323(-) A-G intron -    22484847
chr5:137862324(-) A-G intron -    22484847
chr5:137864691(-) A-G intron -    22484847
chr5:137868705(-) A-G intron -    22484847
chr5:137868739(-) A-G intron -    22484847
chr5:137868766(-) A-G intron -    22484847
chr5:137868767(-) A-G intron -    22484847
chr5:137868847(-) A-G intron -    22484847
chr5:137868856(-) A-G intron -    22484847
chr5:137868896(-) A-G intron -    22484847
chr5:137869203(-) A-G intron -    22484847
chr5:137869262(-) A-G intron -    22484847
chr5:137869266(-) A-G intron -    22484847
chr5:137869299(-) A-G intron -    22484847
chr5:137870750(-) A-G intron -    22484847
chr5:137870778(-) A-G intron -    22484847
chr5:137870822(-) A-G intron -    22484847
chr5:137870859(-) A-G intron -    22484847
chr5:137870867(-) A-G intron -    22484847
chr5:137870885(-) A-G intron -    22484847
chr5:137871327(-) A-G intron -    22484847
chr5:137871512(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ETF1
chr5:137843147-137843148(-) m6A 3'UTR       24284625//27773535
chr5:137843207-137843208(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr5:137843285-137843286(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:137843339-137843340(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:137843379-137843380(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:137843475-137843476(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr5:137843512-137843513(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr5:137843626-137843627(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr5:137843755-137843756(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr5:137843829-137843830(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr5:137843834-137843835(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr5:137843839-137843840(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr5:137843845-137843846(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr5:137843879-137843880(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr5:137843890-137843891(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr5:137843914-137843915(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr5:137844493-137844494(-) m6A CDS       24981863
chr5:137844499-137844500(-) m6A CDS       24981863
chr5:137846260-137846261(-) m6A CDS       24981863
chr5:137854470-137854471(-) m6A CDS//exon       24284625
chr5:137854514-137854515(-) m6A CDS//exon       24284625
chr5:137865297-137865298(-) m6A 5'UTR//exon//intron       24284625//24981863//27371828
chr5:137865307-137865308(-) m6A 5'UTR//exon//intron       24284625//24981863//27371828
chr5:137877245-137877246(-) m6A CDS//exon//intron       27773535
chr5:137878476-137878477(-) m6A 5'UTR//intron       24284625//27371828
chr5:137878561-137878562(-) Am 5'UTR//CDS       -
chr5:137878797-137878798(-) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ETF1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hiv1-miR-TAR-3p
l-685,458       5479543
Pha-665752       10461815

Interaction Network (The top 100 interactions):


Interactor1: hiv1-miR-TAR-3p
Interactor2: ETF1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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