Basic Information:

  VIRBase ID:  

VHID00701535

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:  MIMAT0006017          CSF1:  NM_000757     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-3p	CSF1
miRBase Accession/Entrez ID	MIMAT0006017	1435
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CSF-1//MCSF

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CSF1	chr1:110462452(+) A-I      intronic chr1:110463131(+) A-I      intronic chr1:110462993(+) A-I      intronic chr1:110461999(+) A-I      intronic chr1:110462380(+) A-I      intronic chr1:110462089(+) A-I      intronic chr1:110463130(+) A-I      intronic chr1:110462379(+) A-I      intronic chr1:110462461(+) A-I      intronic chr1:110462466(+) A-I      intronic chr1:110462327(+) A-I      intronic chr1:110461925(+) A-I      intronic chr1:110461998(+) A-I      intronic chr1:110462326(+) A-I      intronic chr1:110462470(+) A-I      intronic chr1:110461989(+) A-I      intronic chr1:110462086(+) A-I      intronic chr1:110462040(+) A-I      intronic chr1:110462079(+) A-I      intronic chr1:110459303(+) A-I      intronic chr1:110462460(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CSF1	chr1:110462460(+) A-G intron -    22484847 chr1:110462461(+) A-G intron -    22484847 chr1:110462466(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CSF1	chr1:110453418-110453419(+) m6A 5'UTR//intron       24981863 chr1:110453542-110453543(+) m6A 5'UTR//intron       24981863 chr1:110465101-110465102(+) m6A exon//intron       - chr1:110465135-110465136(+) m6A exon//intron       - chr1:110465916-110465917(+) m6A CDS//intron       24284625//25456834//24981863//22575960//22608085 chr1:110465927-110465928(+) m6A CDS//intron       24284625//25456834//24981863//22575960//22608085 chr1:110466038-110466039(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960 chr1:110466054-110466055(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960 chr1:110466203-110466204(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:110466245-110466246(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:110466259-110466260(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:110466378-110466379(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:110466401-110466402(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr1:110466429-110466430(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr1:110466616-110466617(+) m6A CDS//intron       - chr1:110467789-110467790(+) m6A CDS       24284625 chr1:110467798-110467799(+) m6A CDS       24284625 chr1:110468701-110468702(+) m6A 3'UTR//intron       - chr1:110471486-110471487(+) m6A 3'UTR       24284625//24981863 chr1:110471507-110471508(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:110471592-110471593(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:110471597-110471598(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:110471639-110471640(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:110471749-110471750(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:110471800-110471801(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:110471813-110471814(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:110471867-110471868(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:110471914-110471915(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:110471924-110471925(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:110471965-110471966(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:110472029-110472030(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:110472134-110472135(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:110472270-110472271(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:110472290-110472291(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:110472460-110472461(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:110472553-110472554(+) m6A 3'UTR       24284625//25456834//24981863//26404942 chr1:110472588-110472589(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942 chr1:110472678-110472679(+) m6A 3'UTR       24209618//24981863 chr1:110472715-110472716(+) m6A 3'UTR       - chr1:110472727-110472728(+) m6A 3'UTR       - chr1:110473082-110473083(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CSF1	Chromatin K562 cells     - Cytoplasm Ovarian cancer cell line (Hey)     28131007 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Polysome Ovarian cancer cell line (Hey)     28131007

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hiv1-miR-TAR-3p	l-685,458       5479543 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-3p
Interactor2: CSF1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg