Basic Information:

  VIRBase ID:  

VHID00701220

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:  MIMAT0006017          ARRDC1-AS1:  NR_122035     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-3p	ARRDC1-AS1
miRBase Accession/Entrez ID	MIMAT0006017	85026
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	lncRNA
Alias	-	C9orf37

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt	PMID
LincSNP 3.0	ARRDC1-AS1	rs1045777 chr9:137618103 C/T         20339536

RNA Editing:

Resource	Symbol	Editing Position
Lncediting	ARRDC1-AS1	chr9: 140510573     chr9: 140510586     chr9: 140510603     chr9: 140510564

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ARRDC1-AS1	chr9:140511655(-) A-I      intronic chr9:140510756(-) A-I      intronic chr9:140510741(-) A-I      intronic chr9:140510716(-) A-I      intronic chr9:140511694(-) A-I      intronic chr9:140511651(-) A-I      intronic chr9:140511677(-) A-I      intronic chr9:140510776(-) A-I      intronic chr9:140510706(-) A-I      intronic chr9:140511649(-) A-I      intronic chr9:140511641(-) A-I      intronic chr9:140510703(-) A-I      intronic chr9:140511613(-) A-I      intronic chr9:140510781(-) A-I      intronic chr9:140510745(-) A-I      intronic chr9:140510746(-) A-I      intronic chr9:140511633(-) A-I      intronic chr9:140511836(-) A-I      intronic chr9:140510573(-) A-I      NonSyn:Thr->Ala chr9:140510766(-) A-I      intronic chr9:140510586(-) A-I      Syn:Ser->Ser chr9:140510765(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARRDC1-AS1	chr9:140510086-140510087(-) m6A exon       24284625//25456834//27371828//27773536//22608085 chr9:140510133-140510134(-) m6A exon       24284625//25456834//27371828//27773536//22608085 chr9:140510202-140510203(-) m6A exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr9:140510321-140510322(-) m6A exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr9:140510454-140510455(-) m6A exon       24284625//24209618//25456834//24981863//27773535//22608085 chr9:140510466-140510467(-) m6A exon       24284625//24209618//25456834//24981863//27773535//22608085 chr9:140510501-140510502(-) m6A exon       24284625//24209618//25456834//24981863//27773535//22608085 chr9:140510615-140510616(-) m6A exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr9:140511881-140511882(-) m6A exon//intron       - chr9:140511902-140511903(-) m6A exon//intron       - chr9:140512294-140512295(-) m6A exon//intron       - chr9:140512315-140512316(-) m6A exon//intron       - chr9:140512331-140512332(-) m6A exon//intron       - chr9:140512344-140512345(-) m6A exon//intron       - chr9:140512375-140512376(-) m6A exon//intron       - chr9:140512437-140512438(-) m6A exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr9:140512457-140512458(-) m6A exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr9:140512489-140512490(-) m6A exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr9:140512502-140512503(-) m6A exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr9:140512509-140512510(-) m6A exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr9:140512558-140512559(-) m6A exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr9:140512600-140512601(-) m6A exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr9:140512880-140512881(-) m6A exon//intron       24284625//25456834//27371828//27773536 chr9:140513124-140513125(-) m6A exon       24284625//25456834//24981863//27773535//22608085 chr9:140513134-140513135(-) m1A exon       26863196//26863410 chr9:140513231-140513232(-) m6A exon       24284625//25456834//24981863//27773535//22608085 chr9:140513246-140513247(-) m6A exon       24284625//25456834//24981863//22608085 chr9:140513274-140513275(-) m6A exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ARRDC1-AS1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hiv1-miR-TAR-3p	l-685,458       5479543 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-3p
Interactor2: ARRDC1-AS1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg