Detail Information

Basic Information:


  VIRBase ID:  

VHID00700823

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-5p:           GXYLT1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hiv1-miR-TAR-5p GXYLT1
miRBase
Accession/Entrez ID		 MIMAT0006016 283464
Organism Human immunodeficiency virus 1 (HIV-1) Homo sapiens
Category miRNA mRNA
Alias - GLT8D3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GXYLT1
chr12:42479906(-) A-I      3'UTR
chr12:42479886(-) A-I      3'UTR
chr12:42479896(-) A-I      3'UTR
chr12:42479871(-) A-I      3'UTR
chr12:42481095(-) A-I      3'UTR
chr12:42479925(-) A-I      3'UTR
chr12:42479918(-) A-I      3'UTR
chr12:42481096(-) A-I      3'UTR
chr12:42486611(-) A-I      intronic
chr12:42479913(-) A-I      3'UTR
chr12:42481058(-) A-I      3'UTR
chr12:42481059(-) A-I      3'UTR
chr12:42479867(-) A-I      3'UTR
chr12:42479866(-) A-I      3'UTR
chr12:42532993(-) A-I      intronic
chr12:42520600(-) A-I      intronic
chr12:42520638(-) A-I      intronic
chr12:42520674(-) A-I      intronic
chr12:42528206(-) A-I      intronic
chr12:42528211(-) A-I      intronic
chr12:42528217(-) A-I      intronic
chr12:42486996(-) A-I      intronic
chr12:42530745(-) A-I      intronic
chr12:42530805(-) A-I      intronic
chr12:42531987(-) A-I      intronic
chr12:42520599(-) A-I      intronic
chr12:42532973(-) A-I      intronic
chr12:42532986(-) A-I      intronic
chr12:42501258(-) A-I      intronic
chr12:42487028(-) A-I      intronic
chr12:42487037(-) A-I      intronic
chr12:42487073(-) A-I      intronic
chr12:42488201(-) A-I      intronic
chr12:42501321(-) A-I      intronic
chr12:42514537(-) A-I      intronic
chr12:42515216(-) A-I      intronic
chr12:42515317(-) A-I      intronic
chr12:42519658(-) A-I      intronic
chr12:42520171(-) A-I      intronic
chr12:42493596(-) A-I      intronic
chr12:42536303(-) A-I      intronic
chr12:42519973(-) A-I      intronic
chr12:42487127(-) A-I      intronic
chr12:42531969(-) A-I      intronic
chr12:42530668(-) A-I      intronic
chr12:42501371(-) A-I      intronic
chr12:42520492(-) A-I      intronic
chr12:42520158(-) A-I      intronic
chr12:42497027(-) A-I      intronic
chr12:42519972(-) A-I      intronic
chr12:42520136(-) A-I      intronic
chr12:42515289(-) A-I      intronic
chr12:42487990(-) A-I      intronic
chr12:42514588(-) A-I      intronic
chr12:42531496(-) A-I      intronic
chr12:42488378(-) A-I      intronic
chr12:42487010(-) A-I      intronic
chr12:42519599(-) A-I      intronic
chr12:42530652(-) A-I      intronic
chr12:42520127(-) A-I      intronic
chr12:42527919(-) A-I      intronic
chr12:42500644(-) A-I      intronic
chr12:42530673(-) A-I      intronic
chr12:42519936(-) A-I      intronic
chr12:42487121(-) A-I      intronic
chr12:42488349(-) A-I      intronic
chr12:42527890(-) A-I      intronic
chr12:42514556(-) A-I      intronic
chr12:42532009(-) A-I      intronic
chr12:42519657(-) A-I      intronic
chr12:42488317(-) A-I      intronic
chr12:42515246(-) A-I      intronic
chr12:42515231(-) A-I      intronic
chr12:42531957(-) A-I      intronic
chr12:42487959(-) A-I      intronic
chr12:42530825(-) A-I      intronic
chr12:42536369(-) A-I      intronic
chr12:42487619(-) A-I      intronic
chr12:42487562(-) A-I      intronic
chr12:42528312(-) A-I      intronic
chr12:42532964(-) A-I      intronic
chr12:42527949(-) A-I      intronic
chr12:42531929(-) A-I      intronic
chr12:42536276(-) A-I      intronic
chr12:42501327(-) A-I      intronic
chr12:42536217(-) A-I      intronic
chr12:42536432(-) A-I      intronic
chr12:42500672(-) A-I      intronic
chr12:42514465(-) A-I      intronic
chr12:42488366(-) A-I      intronic
chr12:42487511(-) A-I      intronic
chr12:42530651(-) A-I      intronic
chr12:42476490(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GXYLT1
chr12:42488349(-) A-G intron -    22484847
chr12:42476490(-) A-G exon 3'UTR    22484847
chr12:42500672(-) A-G intron -    22484847
chr12:42514465(-) A-G intron -    22484847
chr12:42515231(-) A-G intron -    22484847
chr12:42519657(-) A-G intron -    22484847
chr12:42520127(-) A-G intron -    22484847
chr12:42520136(-) A-G intron -    22484847
chr12:42520158(-) A-G intron -    22484847
chr12:42520492(-) A-G intron -    22484847
chr12:42530651(-) A-G intron -    22484847
chr12:42530652(-) A-G intron -    22484847
chr12:42530668(-) A-G intron -    22484847
chr12:42530673(-) A-G intron -    22484847
chr12:42531957(-) A-G intron -    22484847
chr12:42531969(-) A-G intron -    22484847
chr12:42532009(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GXYLT1
chr12:42477341-42477342(-) m6A 3'UTR       27773535
chr12:42477366-42477367(-) m6A 3'UTR       27773535
chr12:42477643-42477644(-) m6A 3'UTR       27773535
chr12:42477684-42477685(-) m6A 3'UTR       27773535
chr12:42477692-42477693(-) m6A 3'UTR       27773535
chr12:42477979-42477980(-) m6A 3'UTR       24981863//27773535//22608085
chr12:42480958-42480959(-) m6A 3'UTR       24981863//27773535
chr12:42481146-42481147(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr12:42481228-42481229(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr12:42481246-42481247(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr12:42481309-42481310(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085
chr12:42481395-42481396(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr12:42481419-42481420(-) Y 3'UTR       26075521
chr12:42481554-42481555(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr12:42481641-42481642(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr12:42481685-42481686(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr12:42481695-42481696(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr12:42481701-42481702(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr12:42481710-42481711(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr12:42491307-42491308(-) m6A CDS       24284625//24981863//27773535//22608085
chr12:42538353-42538354(-) m1A CDS       26863196//26863410
chr12:42538544-42538545(-) m6A 5'UTR       24209618//25456834//24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GXYLT1
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hiv1-miR-TAR-5p
Interactor2: GXYLT1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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