Basic Information:

  VIRBase ID:  

VHID00700726

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-5p:  MIMAT0006016          SDK1:  NM_152744     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-5p	SDK1
miRBase Accession/Entrez ID	MIMAT0006016	221935
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SDK1	chr7:3971075(+) A-I      intronic chr7:3803417(+) A-I      intronic chr7:3803418(+) A-I      intronic chr7:3803423(+) A-I      intronic chr7:3803427(+) A-I      intronic chr7:3803445(+) A-I      intronic chr7:3565604(+) A-I      intronic chr7:3565610(+) A-I      intronic chr7:3565611(+) A-I      intronic chr7:3565637(+) A-I      intronic chr7:3565652(+) A-I      intronic chr7:3684315(+) A-I      intronic chr7:3684319(+) A-I      intronic chr7:3684332(+) A-I      intronic chr7:3759355(+) A-I      intronic chr7:3759364(+) A-I      intronic chr7:3759399(+) A-I      intronic chr7:3759402(+) A-I      intronic chr7:3759413(+) A-I      intronic chr7:3759422(+) A-I      intronic chr7:3759423(+) A-I      intronic chr7:3344439(+) A-I      intronic chr7:3759425(+) A-I      intronic chr7:4239549(+) A-I      intronic chr7:4239551(+) A-I      intronic chr7:4239556(+) A-I      intronic chr7:4239562(+) A-I      intronic chr7:3362511(+) A-I      intronic chr7:3362519(+) A-I      intronic chr7:3362583(+) A-I      intronic chr7:3362654(+) A-I      intronic chr7:3362710(+) A-I      intronic chr7:3397906(+) A-I      intronic chr7:3532089(+) A-I      intronic chr7:3532638(+) A-I      intronic chr7:3545080(+) A-I      intronic chr7:4239612(+) A-I      intronic chr7:4298920(+) A-I      intronic chr7:4298924(+) A-I      intronic chr7:4298928(+) A-I      intronic chr7:4298944(+) A-I      intronic chr7:4298956(+) A-I      intronic chr7:4298960(+) A-I      intronic chr7:4298973(+) A-I      intronic chr7:4298979(+) A-I      intronic chr7:4298981(+) A-I      intronic chr7:4298992(+) A-I      intronic chr7:3466890(+) A-I      intronic chr7:3352980(+) A-I      intronic chr7:3356557(+) A-I      intronic chr7:3356573(+) A-I      intronic chr7:3803404(+) A-I      intronic chr7:3803388(+) A-I      intronic chr7:3803378(+) A-I      intronic chr7:3803376(+) A-I      intronic chr7:3742603(+) A-I      intronic chr7:3742587(+) A-I      intronic chr7:3356611(+) A-I      intronic chr7:3362535(+) A-I      intronic chr7:3395051(+) A-I      intronic chr7:3397837(+) A-I      intronic chr7:3405468(+) A-I      intronic chr7:3405485(+) A-I      intronic chr7:3405491(+) A-I      intronic chr7:3422786(+) A-I      intronic chr7:3422804(+) A-I      intronic chr7:3422859(+) A-I      intronic chr7:3422935(+) A-I      intronic chr7:3445625(+) A-I      intronic chr7:3450336(+) A-I      intronic chr7:3457894(+) A-I      intronic chr7:3457899(+) A-I      intronic chr7:3457919(+) A-I      intronic chr7:3464378(+) A-I      intronic chr7:3464382(+) A-I      intronic chr7:3464386(+) A-I      intronic chr7:3464511(+) A-I      intronic chr7:3466922(+) A-I      intronic chr7:3466950(+) A-I      intronic chr7:3469332(+) A-I      intronic chr7:3469333(+) A-I      intronic chr7:3518933(+) A-I      intronic chr7:3518943(+) A-I      intronic chr7:3518986(+) A-I      intronic chr7:3574788(+) A-I      intronic chr7:3742586(+) A-I      intronic chr7:3742571(+) A-I      intronic chr7:3742561(+) A-I      intronic chr7:3620558(+) A-I      intronic chr7:3684245(+) A-I      intronic chr7:3704138(+) A-I      intronic chr7:3830413(+) A-I      intronic chr7:3867789(+) A-I      intronic chr7:3867790(+) A-I      intronic chr7:3740536(+) A-I      intronic chr7:3740534(+) A-I      intronic chr7:3868351(+) A-I      intronic chr7:3881369(+) A-I      intronic chr7:3884975(+) A-I      intronic chr7:3740523(+) A-I      intronic chr7:3740522(+) A-I      intronic chr7:3740514(+) A-I      intronic chr7:3739822(+) A-I      intronic chr7:3739793(+) A-I      intronic chr7:3739792(+) A-I      intronic chr7:3739791(+) A-I      intronic chr7:3885002(+) A-I      intronic chr7:3893434(+) A-I      intronic chr7:3896378(+) A-I      intronic chr7:3899573(+) A-I      intronic chr7:3985264(+) A-I      intronic chr7:3985272(+) A-I      intronic chr7:3985273(+) A-I      intronic chr7:3985452(+) A-I      intronic chr7:4069040(+) A-I      intronic chr7:4121908(+) A-I      intronic chr7:4121953(+) A-I      intronic chr7:4251322(+) A-I      intronic chr7:4268301(+) A-I      intronic chr7:4268311(+) A-I      intronic chr7:4268313(+) A-I      intronic chr7:3464408(+) A-I      intronic chr7:3665737(+) A-I      intronic chr7:3545111(+) A-I      intronic chr7:3788993(+) A-I      intronic chr7:3696640(+) A-I      intronic chr7:3897114(+) A-I      intronic chr7:3799328(+) A-I      intronic chr7:3985354(+) A-I      intronic chr7:3685751(+) A-I      intronic chr7:4121948(+) A-I      intronic chr7:4252750(+) A-I      intronic chr7:3884960(+) A-I      intronic chr7:4182035(+) A-I      intronic chr7:3635483(+) A-I      intronic chr7:3356597(+) A-I      intronic chr7:3356698(+) A-I      intronic chr7:4121926(+) A-I      intronic chr7:3985344(+) A-I      intronic chr7:3517276(+) A-I      intronic chr7:3684325(+) A-I      intronic chr7:3684237(+) A-I      intronic chr7:3370542(+) A-I      intronic chr7:4178343(+) A-I      intronic chr7:3819403(+) A-I      intronic chr7:3356702(+) A-I      intronic chr7:3356613(+) A-I      intronic chr7:3397928(+) A-I      intronic chr7:4178320(+) A-I      intronic chr7:3356554(+) A-I      intronic chr7:3466998(+) A-I      intronic chr7:4193139(+) A-I      intronic chr7:3819417(+) A-I      intronic chr7:3469358(+) A-I      intronic chr7:3405524(+) A-I      intronic chr7:4122190(+) A-I      intronic chr7:3687323(+) A-I      intronic chr7:3684155(+) A-I      intronic chr7:3397194(+) A-I      intronic chr7:3871549(+) A-I      intronic chr7:3513836(+) A-I      intronic chr7:3884886(+) A-I      intronic chr7:3457829(+) A-I      intronic chr7:4268444(+) A-I      intronic chr7:3620479(+) A-I      intronic chr7:3698386(+) A-I      intronic chr7:3382073(+) A-I      intronic chr7:3469458(+) A-I      intronic chr7:4135415(+) A-I      intronic chr7:3362542(+) A-I      intronic chr7:3981745(+) A-I      intronic chr7:4270938(+) A-I      intronic chr7:3663038(+) A-I      intronic chr7:4277743(+) A-I      intronic chr7:3871598(+) A-I      intronic chr7:4270924(+) A-I      intronic chr7:3518844(+) A-I      intronic chr7:3687198(+) A-I      intronic chr7:3696641(+) A-I      intronic chr7:3408751(+) A-I      intronic chr7:3897247(+) A-I      intronic chr7:4252734(+) A-I      intronic chr7:3466989(+) A-I      intronic chr7:3897129(+) A-I      intronic chr7:3897942(+) A-I      intronic chr7:3801020(+) A-I      intronic chr7:4278097(+) A-I      intronic chr7:3977730(+) A-I      intronic chr7:3516957(+) A-I      intronic chr7:4122046(+) A-I      intronic chr7:4252759(+) A-I      intronic chr7:3356762(+) A-I      intronic chr7:3684248(+) A-I      intronic chr7:3356556(+) A-I      intronic chr7:3620588(+) A-I      intronic chr7:4135386(+) A-I      intronic chr7:3981737(+) A-I      intronic chr7:3684333(+) A-I      intronic chr7:3819412(+) A-I      intronic chr7:3819407(+) A-I      intronic chr7:3684330(+) A-I      intronic chr7:3548143(+) A-I      intronic chr7:3389293(+) A-I      intronic chr7:3684251(+) A-I      intronic chr7:4121981(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SDK1	chr7:3604084(+) A-I intron -    21960545 chr7:4093639(+) T-C intron -    22484847 chr7:4192988(+) C-T intron -    22484847 chr7:4251380(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SDK1	chr7:3377729-3377730(+) m6A intron       22608085 chr7:3377818-3377819(+) m6A intron       22608085 chr7:3377824-3377825(+) m6A intron       22608085 chr7:3377877-3377878(+) m6A intron       22608085 chr7:3769476-3769477(+) Gm intron       16381836 chr7:3769477-3769478(+) Gm intron       16381836 chr7:4304804-4304805(+) m6A CDS//exon       24209618 chr7:4304983-4304984(+) m6A CDS//exon//intron       24209618//24981863 chr7:4305080-4305081(+) m6A 3'UTR//exon//intron       24209618//24981863//22608085 chr7:4305787-4305788(+) m6A 3'UTR//exon//intron       25456834 chr7:4305813-4305814(+) m6A 3'UTR//exon//intron       25456834 chr7:4305821-4305822(+) m6A 3'UTR//exon//intron       25456834 chr7:4306476-4306477(+) m6A 3'UTR//intron       25456834//24981863 chr7:4306483-4306484(+) m6A 3'UTR//intron       25456834//24981863 chr7:4306556-4306557(+) m6A 3'UTR//intron       25456834//24981863 chr7:4307091-4307092(+) m6A 3'UTR//intron       25456834 chr7:4307105-4307106(+) m6A 3'UTR//intron       25456834 chr7:4307205-4307206(+) m6A 3'UTR//intron       25456834 chr7:4307414-4307415(+) m6A 3'UTR//intron       24209618//25456834 chr7:4307473-4307474(+) m6A 3'UTR//intron       24284625//24209618//25456834 chr7:4307485-4307486(+) m6A 3'UTR//intron       24284625//24209618//25456834 chr7:4307507-4307508(+) m6A 3'UTR//intron       24284625//24209618//25456834//22608085 chr7:4307523-4307524(+) m6A 3'UTR//intron       24284625//24209618//25456834//22608085 chr7:4307540-4307541(+) m6A 3'UTR//intron       24284625//24209618//25456834//22608085 chr7:4307694-4307695(+) m6A 3'UTR//intron       24284625//24209618//25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SDK1	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-5p
Interactor2: SDK1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg