Detail Information

Basic Information:


  VIRBase ID:  

VHID00700715

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-5p:           SKA3:      

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Interactor Information:


Interactor1 Interactor2
Symbol hiv1-miR-TAR-5p SKA3
miRBase
Accession/Entrez ID		 MIMAT0006016 221150
Organism Human immunodeficiency virus 1 (HIV-1) Homo sapiens
Category miRNA mRNA
Alias - C13orf3//RAMA1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SKA3
chr13:21740027(-) A-I      intronic
chr13:21740324(-) A-I      intronic
chr13:21740325(-) A-I      intronic
chr13:21737268(-) A-I      intronic
chr13:21740340(-) A-I      intronic
chr13:21737253(-) A-I      intronic
chr13:21743947(-) A-I      intronic
chr13:21740833(-) A-I      intronic
chr13:21736633(-) A-I      intronic
chr13:21740335(-) A-I      intronic
chr13:21739908(-) A-I      intronic
chr13:21739997(-) A-I      intronic
chr13:21740359(-) A-I      intronic
chr13:21740334(-) A-I      intronic
chr13:21740271(-) A-I      intronic
chr13:21745594(-) A-I      intronic
chr13:21736580(-) A-I      intronic
chr13:21744411(-) A-I      intronic
chr13:21739926(-) A-I      intronic
chr13:21743954(-) A-I      intronic
chr13:21745633(-) A-I      intronic
chr13:21737075(-) A-I      intronic
chr13:21737992(-) A-I      intronic
chr13:21738111(-) A-I      intronic
chr13:21738106(-) A-I      intronic
chr13:21737970(-) A-I      intronic
chr13:21737960(-) A-I      intronic
chr13:21737945(-) A-I      intronic
chr13:21736626(-) A-I      intronic
chr13:21745592(-) A-I      intronic
chr13:21739479(-) A-I      intronic
chr13:21745526(-) A-I      intronic
chr13:21738107(-) A-I      intronic
chr13:21740249(-) A-I      intronic
chr13:21737995(-) A-I      intronic
chr13:21736976(-) A-I      intronic
chr13:21737979(-) A-I      intronic
chr13:21738154(-) A-I      intronic
chr13:21740230(-) A-I      intronic
chr13:21745678(-) A-I      intronic
chr13:21740853(-) A-I      intronic
chr13:21736620(-) A-I      intronic
chr13:21739485(-) A-I      intronic
chr13:21740349(-) A-I      intronic
chr13:21737087(-) A-I      intronic
chr13:21738622(-) A-I      intronic
chr13:21737203(-) A-I      intronic
chr13:21737043(-) A-I      intronic
chr13:21736665(-) A-I      intronic
chr13:21736963(-) A-I      intronic
chr13:21740790(-) A-I      intronic
chr13:21745205(-) A-I      intronic
chr13:21743582(-) A-I      intronic
chr13:21736568(-) A-I      intronic
chr13:21736565(-) A-I      intronic
chr13:21737070(-) A-I      intronic
chr13:21738024(-) A-I      intronic
chr13:21739980(-) A-I      intronic
chr13:21737278(-) A-I      intronic
chr13:21745653(-) A-I      intronic
chr13:21730274(-) A-I      intronic
chr13:21740337(-) A-I      intronic
chr13:21740028(-) A-I      intronic
chr13:21740321(-) A-I      intronic
chr13:21745275(-) A-I      intronic
chr13:21737063(-) A-I      intronic
chr13:21745164(-) A-I      intronic
chr13:21737065(-) A-I      intronic
chr13:21743596(-) A-I      intronic
chr13:21737210(-) A-I      intronic
chr13:21741716(-) A-I      intronic
chr13:21744429(-) A-I      intronic
chr13:21737153(-) A-I      intronic
chr13:21740017(-) A-I      intronic
chr13:21745522(-) A-I      intronic
chr13:21737269(-) A-I      intronic
chr13:21742804(-) A-I      intronic
chr13:21738609(-) A-I      intronic
chr13:21739925(-) A-I      intronic
chr13:21738550(-) A-I      intronic
chr13:21740820(-) A-I      intronic
chr13:21736969(-) A-I      intronic
chr13:21737192(-) A-I      intronic
chr13:21740297(-) A-I      intronic
chr13:21730182(-) A-I      intronic
chr13:21737279(-) A-I      intronic
chr13:21739974(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SKA3
chr13:21737087(-) A-I intron -    22327324
chr13:21738550(-) A-G intron -    22484847
chr13:21736565(-) A-G intron -    22484847
chr13:21736568(-) A-G intron -    22484847
chr13:21736580(-) A-G intron -    22484847
chr13:21736969(-) A-G intron -    22484847
chr13:21737065(-) A-G intron -    22484847
chr13:21737087(-) A-G intron -    22484847
chr13:21741716(-) A-G intron -    22484847
chr13:21744429(-) A-G intron -    22484847
chr13:21737192(-) A-G intron -    22484847
chr13:21738609(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SKA3
chr13:21727737-21727738(-) m6A 3'UTR       27773535
chr13:21727744-21727745(-) m6A 3'UTR       27773535
chr13:21727828-21727829(-) m6A 3'UTR       27773535
chr13:21727892-21727893(-) m6A 3'UTR       27773535
chr13:21727939-21727940(-) m6A 3'UTR       27773535
chr13:21728009-21728010(-) Y 3'UTR       26075521
chr13:21728363-21728364(-) m6A 3'UTR       27773535
chr13:21728703-21728704(-) m6A 3'UTR       24981863
chr13:21728710-21728711(-) m6A 3'UTR       24981863
chr13:21728729-21728730(-) m6A 3'UTR       24981863
chr13:21728796-21728797(-) m6A 3'UTR       24981863
chr13:21728874-21728875(-) m6A 3'UTR       27773535
chr13:21728919-21728920(-) m6A 3'UTR       27773535
chr13:21728990-21728991(-) m6A 3'UTR       24981863//27773535
chr13:21729155-21729156(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr13:21729165-21729166(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr13:21729228-21729229(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr13:21729254-21729255(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr13:21729259-21729260(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr13:21729834-21729835(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085
chr13:21729861-21729862(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085
chr13:21729866-21729867(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085
chr13:21729872-21729873(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085
chr13:21729927-21729928(-) m6A 3'UTR//CDS//intron       24981863//27773535//22608085
chr13:21732107-21732108(-) m6A 3'UTR//CDS//intron       27773535
chr13:21732175-21732176(-) m6A 3'UTR//CDS//intron       27773535
chr13:21742152-21742153(-) m6A 3'UTR//CDS//intron       24981863//27773535//22608085
chr13:21742206-21742207(-) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr13:21742262-21742263(-) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr13:21742287-21742288(-) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr13:21742330-21742331(-) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr13:21742348-21742349(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085
chr13:21742383-21742384(-) m6A 3'UTR//CDS//exon//intron       24284625//24981863//27773535//22608085
chr13:21742475-21742476(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535//22608085
chr13:21746819-21746820(-) m6A 3'UTR//CDS//exon//intron       27371828
chr13:21746849-21746850(-) m6A exon//intron       27371828
chr13:21750560-21750561(-) m6A CDS//exon       24284625//27371828//27773536//22608085
chr13:21750611-21750612(-) m6A CDS//exon       24284625//27371828//27773536//22608085
chr13:21750688-21750689(-) m6A 5'UTR       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SKA3
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hiv1-miR-TAR-5p
Interactor2: SKA3

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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