Basic Information:

  VIRBase ID:  

VHID00700174

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-5p:  MIMAT0006016          ATG4A:  NM_001321289     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-5p	ATG4A
miRBase Accession/Entrez ID	MIMAT0006016	115201
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	APG4A//AUTL2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ATG4A	chrX:107355763(+) A-I      intronic chrX:107395545(+) A-I      intronic chrX:107355761(+) A-I      intronic chrX:107355751(+) A-I      intronic chrX:107353519(+) A-I      intronic chrX:107353546(+) A-I      intronic chrX:107353386(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ATG4A	chrX:107334953-107334954(+) m6A 5'UTR       24981863 chrX:107334975-107334976(+) m6A 5'UTR       24981863 chrX:107335090-107335091(+) m6A 5'UTR//intron       24981863 chrX:107396952-107396953(+) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085 chrX:107396992-107396993(+) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085 chrX:107396998-107396999(+) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085 chrX:107397012-107397013(+) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085 chrX:107397055-107397056(+) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085 chrX:107397100-107397101(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:107397105-107397106(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:107397110-107397111(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:107397115-107397116(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:107397151-107397152(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:107397266-107397267(+) m6A 3'UTR       24284625//24981863//22608085 chrX:107397296-107397297(+) m6A 3'UTR       24284625//24981863//22608085 chrX:107397355-107397356(+) m6A 3'UTR       24981863//22608085 chrX:107397735-107397736(+) m6A 3'UTR       24981863 chrX:107397775-107397776(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ATG4A	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-5p
Interactor2: ATG4A

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg