Basic Information:

  VIRBase ID:  

VHID00699936

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-5p:  MIMAT0006016          HSH2D:  NM_001369809     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-5p	HSH2D
miRBase Accession/Entrez ID	MIMAT0006016	84941
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ALX//HSH2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	HSH2D	chr19:16261151(+) A-I      intronic chr19:16261140(+) A-I      intronic chr19:16261130(+) A-I      intronic chr19:16258118(+) A-I      intronic chr19:16260093(+) A-I      intronic chr19:16260087(+) A-I      intronic chr19:16258898(+) A-I      intronic chr19:16258310(+) A-I      intronic chr19:16258243(+) A-I      intronic chr19:16258151(+) A-I      intronic chr19:16258144(+) A-I      intronic chr19:16248833(+) A-I      intronic chr19:16248939(+) A-I      intronic chr19:16248946(+) A-I      intronic chr19:16251690(+) A-I      intronic chr19:16258134(+) A-I      intronic chr19:16254146(+) A-I      intronic chr19:16255637(+) A-I      intronic chr19:16255689(+) A-I      intronic chr19:16255754(+) A-I      intronic chr19:16255764(+) A-I      intronic chr19:16256206(+) A-I      intronic chr19:16256725(+) A-I      intronic chr19:16256780(+) A-I      intronic chr19:16257692(+) A-I      intronic chr19:16258119(+) A-I      intronic chr19:16257819(+) A-I      intronic chr19:16257772(+) A-I      intronic chr19:16257765(+) A-I      intronic chr19:16257700(+) A-I      intronic chr19:16262654(+) A-I      intronic chr19:16256699(+) A-I      intronic chr19:16267692(+) A-I      intronic chr19:16267270(+) A-I      intronic chr19:16267256(+) A-I      intronic chr19:16267254(+) A-I      intronic chr19:16267228(+) A-I      intronic chr19:16267194(+) A-I      intronic chr19:16267117(+) A-I      intronic chr19:16267049(+) A-I      intronic chr19:16267008(+) A-I      intronic chr19:16266699(+) A-I      intronic chr19:16266618(+) A-I      intronic chr19:16266535(+) A-I      intronic chr19:16262861(+) A-I      intronic chr19:16262796(+) A-I      intronic chr19:16262729(+) A-I      intronic chr19:16262720(+) A-I      intronic chr19:16262661(+) A-I      intronic chr19:16262156(+) A-I      intronic chr19:16262151(+) A-I      intronic chr19:16262080(+) A-I      intronic chr19:16262076(+) A-I      intronic chr19:16262067(+) A-I      intronic chr19:16262047(+) A-I      intronic chr19:16261973(+) A-I      intronic chr19:16261969(+) A-I      intronic chr19:16261935(+) A-I      intronic chr19:16261895(+) A-I      intronic chr19:16261884(+) A-I      intronic chr19:16261879(+) A-I      intronic chr19:16261878(+) A-I      intronic chr19:16261526(+) A-I      intronic chr19:16261338(+) A-I      intronic chr19:16261337(+) A-I      intronic chr19:16261269(+) A-I      intronic chr19:16261194(+) A-I      intronic chr19:16261154(+) A-I      intronic chr19:16260581(+) A-I      intronic chr19:16260574(+) A-I      intronic chr19:16260571(+) A-I      intronic chr19:16260559(+) A-I      intronic chr19:16260222(+) A-I      intronic chr19:16260200(+) A-I      intronic chr19:16260179(+) A-I      intronic chr19:16260112(+) A-I      intronic chr19:16269265(+) A-I      3'UTR chr19:16269266(+) A-I      3'UTR chr19:16269257(+) A-I      3'UTR chr19:16260540(+) A-I      intronic chr19:16261174(+) A-I      intronic chr19:16261010(+) A-I      intronic chr19:16260233(+) A-I      intronic chr19:16262730(+) A-I      intronic chr19:16266510(+) A-I      intronic chr19:16260076(+) A-I      intronic chr19:16260139(+) A-I      intronic chr19:16258130(+) A-I      intronic chr19:16260665(+) A-I      intronic chr19:16267230(+) A-I      intronic chr19:16261038(+) A-I      intronic chr19:16260160(+) A-I      intronic chr19:16260196(+) A-I      intronic chr19:16266655(+) A-I      intronic chr19:16267622(+) A-I      intronic chr19:16260605(+) A-I      intronic chr19:16261561(+) A-I      intronic chr19:16266908(+) A-I      intronic chr19:16260496(+) A-I      intronic chr19:16261655(+) A-I      intronic chr19:16266986(+) A-I      intronic chr19:16267778(+) A-I      intronic chr19:16267597(+) A-I      intronic chr19:16267274(+) A-I      intronic chr19:16261197(+) A-I      intronic chr19:16267268(+) A-I      intronic chr19:16267588(+) A-I      intronic chr19:16258033(+) A-I      intronic chr19:16260152(+) A-I      intronic chr19:16260287(+) A-I      intronic chr19:16258039(+) A-I      intronic chr19:16260138(+) A-I      intronic chr19:16266678(+) A-I      intronic chr19:16261095(+) A-I      intronic chr19:16269224(+) A-I      3'UTR chr19:16260178(+) A-I      intronic chr19:16262041(+) A-I      intronic chr19:16267746(+) A-I      intronic chr19:16262797(+) A-I      intronic chr19:16261483(+) A-I      intronic chr19:16258244(+) A-I      intronic chr19:16266511(+) A-I      intronic chr19:16266524(+) A-I      intronic chr19:16258108(+) A-I      intronic chr19:16267596(+) A-I      intronic chr19:16260284(+) A-I      intronic chr19:16261270(+) A-I      intronic chr19:16267177(+) A-I      intronic chr19:16262124(+) A-I      intronic chr19:16262087(+) A-I      intronic chr19:16260626(+) A-I      intronic chr19:16266548(+) A-I      intronic chr19:16266601(+) A-I      intronic chr19:16267717(+) A-I      intronic chr19:16260113(+) A-I      intronic chr19:16258147(+) A-I      intronic chr19:16256162(+) A-I      intronic chr19:16267147(+) A-I      intronic chr19:16261277(+) A-I      intronic chr19:16261557(+) A-I      intronic chr19:16257810(+) A-I      intronic chr19:16257753(+) A-I      intronic chr19:16260052(+) A-I      intronic chr19:16257367(+) A-I      intronic chr19:16267144(+) A-I      intronic chr19:16261125(+) A-I      intronic chr19:16258023(+) A-I      intronic chr19:16266938(+) A-I      intronic chr19:16261365(+) A-I      intronic chr19:16260032(+) A-I      intronic chr19:16267685(+) A-I      intronic chr19:16261958(+) A-I      intronic chr19:16260036(+) A-I      intronic chr19:16267041(+) A-I      intronic chr19:16260497(+) A-I      intronic chr19:16260130(+) A-I      intronic chr19:16261018(+) A-I      intronic chr19:16266499(+) A-I      intronic chr19:16261185(+) A-I      intronic chr19:16267246(+) A-I      intronic chr19:16267196(+) A-I      intronic chr19:16257845(+) A-I      intronic chr19:16266530(+) A-I      intronic chr19:16260248(+) A-I      intronic chr19:16260131(+) A-I      intronic chr19:16258183(+) A-I      intronic chr19:16256184(+) A-I      intronic chr19:16260165(+) A-I      intronic chr19:16261094(+) A-I      intronic chr19:16261274(+) A-I      intronic chr19:16261078(+) A-I      intronic chr19:16266494(+) A-I      intronic chr19:16267148(+) A-I      intronic chr19:16266982(+) A-I      intronic chr19:16267255(+) A-I      intronic chr19:16256140(+) A-I      intronic chr19:16266902(+) A-I      intronic chr19:16258096(+) A-I      intronic chr19:16256724(+) A-I      intronic chr19:16260974(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	HSH2D	chr19:16260036(+) A-I intron -    22327324 chr19:16261274(+) A-I intron -    22327324 chr19:16261564(+) A-I intron -    22327324 chr19:16262041(+) A-I intron -    22327324 chr19:16266531(+) A-I intron -    22327324 chr19:16266892(+) A-I intron -    22327324 chr19:16266902(+) A-I intron -    22327324 chr19:16266908(+) A-I intron -    22327324 chr19:16266986(+) A-I intron -    22327324 chr19:16267045(+) A-I intron -    22327324 chr19:16267207(+) A-I intron -    22327324 chr19:16267246(+) A-I intron -    22327324 chr19:16267542(+) A-I intron -    22327324 chr19:16267633(+) A-I intron -    22327324 chr19:16267685(+) A-I intron -    22327324 chr19:16258096(+) A-G intron -    22484847 chr19:16258112(+) A-G intron -    22484847 chr19:16260032(+) A-G intron -    22484847 chr19:16260036(+) A-G intron -    22484847 chr19:16260044(+) A-G intron -    22484847 chr19:16260077(+) A-G intron -    22484847 chr19:16260113(+) A-G intron -    22484847 chr19:16260130(+) A-G intron -    22484847 chr19:16260131(+) A-G intron -    22484847 chr19:16260138(+) A-G intron -    22484847 chr19:16260287(+) A-G intron -    22484847 chr19:16260496(+) A-G intron -    22484847 chr19:16260540(+) A-G intron -    22484847 chr19:16260987(+) A-G intron -    22484847 chr19:16261010(+) A-G intron -    22484847 chr19:16261018(+) A-G intron -    22484847 chr19:16261038(+) A-G intron -    22484847 chr19:16261078(+) A-G intron -    22484847 chr19:16261094(+) A-G intron -    22484847 chr19:16261095(+) A-G intron -    22484847 chr19:16261185(+) A-G intron -    22484847 chr19:16261197(+) A-G intron -    22484847 chr19:16261202(+) A-G intron -    22484847 chr19:16261206(+) A-G intron -    22484847 chr19:16261255(+) A-G intron -    22484847 chr19:16261274(+) A-G intron -    22484847 chr19:16261332(+) A-G intron -    22484847 chr19:16261543(+) C-A intron -    22484847 chr19:16261557(+) A-G intron -    22484847 chr19:16261561(+) A-G intron -    22484847 chr19:16261564(+) A-G intron -    22484847 chr19:16262041(+) A-G intron -    22484847 chr19:16266524(+) A-G intron -    22484847 chr19:16266531(+) A-G intron -    22484847 chr19:16266548(+) A-G intron -    22484847 chr19:16266583(+) A-G intron -    22484847 chr19:16266592(+) A-G intron -    22484847 chr19:16266601(+) A-G intron -    22484847 chr19:16266900(+) A-G intron -    22484847 chr19:16266902(+) A-G intron -    22484847 chr19:16266908(+) A-G intron -    22484847 chr19:16266954(+) A-G intron -    22484847 chr19:16266986(+) A-G intron -    22484847 chr19:16267045(+) A-G intron -    22484847 chr19:16267148(+) A-G intron -    22484847 chr19:16267170(+) G-A intron -    22484847 chr19:16267177(+) A-G intron -    22484847 chr19:16267207(+) A-G intron -    22484847 chr19:16267246(+) A-G intron -    22484847 chr19:16267255(+) A-G intron -    22484847 chr19:16267542(+) A-G intron -    22484847 chr19:16267543(+) A-G intron -    22484847 chr19:16267588(+) A-G intron -    22484847 chr19:16267596(+) A-G intron -    22484847 chr19:16267633(+) A-G intron -    22484847 chr19:16267685(+) A-G intron -    22484847 chr19:16267717(+) A-G intron -    22484847 chr19:16267721(+) A-G intron -    22484847 chr19:16267746(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HSH2D	chr19:16244849-16244850(+) m6A 5'UTR       24284625 chr19:16244878-16244879(+) m6A 5'UTR       24284625 chr19:16254506-16254507(+) m6A 5'UTR//exon       - chr19:16254519-16254520(+) m6A 5'UTR//exon       - chr19:16259606-16259607(+) m6A CDS//intron       - chr19:16266566-16266567(+) m6A 3'UTR//intron       - chr19:16268080-16268081(+) m6A 3'UTR//CDS       - chr19:16268139-16268140(+) m6A 3'UTR//CDS       - chr19:16268150-16268151(+) m6A 3'UTR//CDS       - chr19:16268231-16268232(+) m6A 3'UTR//CDS       25456834 chr19:16268284-16268285(+) m6A 3'UTR//CDS       25456834 chr19:16268330-16268331(+) m6A 3'UTR//CDS       25456834 chr19:16268399-16268400(+) m6A 3'UTR//CDS       25456834//27371828 chr19:16268462-16268463(+) m6A 3'UTR//CDS       25456834//27371828 chr19:16268608-16268609(+) m6A 3'UTR       25456834 chr19:16268630-16268631(+) m6A 3'UTR       25456834 chr19:16268715-16268716(+) m6A 3'UTR       - chr19:16268852-16268853(+) m6A 3'UTR       - chr19:16268925-16268926(+) m6A 3'UTR       - chr19:16269265-16269266(+) m6A 3'UTR       - chr19:16269334-16269335(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HSH2D	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-5p
Interactor2: HSH2D

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg