Basic Information:

  VIRBase ID:  

VHID00699583

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-5p:  MIMAT0006016          OGFOD2:  NM_001304835     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-5p	OGFOD2
miRBase Accession/Entrez ID	MIMAT0006016	79676
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	OGFOD2	chr12:123459253-123459254(+) m6A 5'UTR//exon       24981863 chr12:123459287-123459288(+) m6A 5'UTR//intron       25456834//24981863 chr12:123459301-123459302(+) m6A 5'UTR//exon//intron       25456834//24981863 chr12:123459321-123459322(+) m6A 5'UTR//exon//intron       25456834//24981863 chr12:123459345-123459346(+) m6A 5'UTR//exon//intron       25456834//24981863//22608085 chr12:123459386-123459387(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//22608085 chr12:123459395-123459396(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//22608085 chr12:123459412-123459413(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//22608085 chr12:123459589-123459590(+) m6A 5'UTR//exon//intron       25456834 chr12:123459652-123459653(+) m6A 5'UTR//exon//intron       - chr12:123459919-123459920(+) m6A CDS//exon//intron       24981863 chr12:123460391-123460392(+) m6A 5'UTR//CDS//exon//intron       24284625 chr12:123460893-123460894(+) m6A 5'UTR//CDS//exon//intron       27773536//22608085 chr12:123460900-123460901(+) m6A 5'UTR//CDS//exon//intron       27773536//22608085 chr12:123460999-123461000(+) m6A exon//intron       - chr12:123461478-123461479(+) m6A 3'UTR//5'UTR//CDS//exon//intron       24284625 chr12:123461507-123461508(+) m6A 3'UTR//5'UTR//CDS//exon//intron       24284625 chr12:123461536-123461537(+) m6A 5'UTR//exon//intron       - chr12:123461546-123461547(+) m6A 5'UTR//exon//intron       - chr12:123462543-123462544(+) m6A 5'UTR//exon//intron       24284625 chr12:123462572-123462573(+) m6A 5'UTR//exon//intron       24284625 chr12:123462738-123462739(+) m6A 5'UTR//intron       24981863 chr12:123462772-123462773(+) m6A intron       24981863 chr12:123463075-123463076(+) m6A 3'UTR//5'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr12:123463105-123463106(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr12:123463453-123463454(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22608085 chr12:123463744-123463745(+) m6A 3'UTR//CDS//exon       24284625//24981863//27773536 chr12:123464271-123464272(+) m6A 3'UTR       24284625//24209618//24981863 chr12:123464337-123464338(+) m6A 3'UTR       24284625//24981863 chr12:123464368-123464369(+) m6A 3'UTR       24284625//24981863 chr12:123464429-123464430(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	OGFOD2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-5p
Interactor2: OGFOD2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg