Detail Information

Basic Information:


  VIRBase ID:  

VHID00699213

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-5p:           LYRM2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hiv1-miR-TAR-5p LYRM2
miRBase
Accession/Entrez ID		 MIMAT0006016 57226
Organism Human immunodeficiency virus 1 (HIV-1) Homo sapiens
Category miRNA mRNA
Alias - DJ122O8.2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LYRM2
chr6:90346456(-) A-I      3'UTR
chr6:90346504(-) A-I      3'UTR
chr6:90342275(-) A-I      3'UTR
chr6:90346579(-) A-I      3'UTR
chr6:90346667(-) A-I      3'UTR
chr6:90344220(-) A-I      3'UTR
chr6:90344701(-) A-I      3'UTR
chr6:90344380(-) A-I      3'UTR
chr6:90344558(-) A-I      3'UTR
chr6:90344522(-) A-I      3'UTR
chr6:90344420(-) A-I      3'UTR
chr6:90346618(-) A-I      3'UTR
chr6:90344368(-) A-I      3'UTR
chr6:90344594(-) A-I      3'UTR
chr6:90344397(-) A-I      3'UTR
chr6:90344403(-) A-I      3'UTR
chr6:90344308(-) A-I      3'UTR
chr6:90346619(-) A-I      3'UTR
chr6:90344345(-) A-I      3'UTR
chr6:90344650(-) A-I      3'UTR
chr6:90344666(-) A-I      3'UTR
chr6:90344576(-) A-I      3'UTR
chr6:90344203(-) A-I      3'UTR
chr6:90344639(-) A-I      3'UTR
chr6:90344204(-) A-I      3'UTR
chr6:90344678(-) A-I      3'UTR
chr6:90344569(-) A-I      3'UTR
chr6:90344523(-) A-I      3'UTR
chr6:90346659(-) A-I      3'UTR
chr6:90346637(-) A-I      3'UTR
chr6:90342301(-) A-I      3'UTR
chr6:90344521(-) A-I      3'UTR
chr6:90346564(-) A-I      3'UTR
chr6:90346514(-) A-I      3'UTR
chr6:90346689(-) A-I      3'UTR
chr6:90344640(-) A-I      3'UTR
chr6:90344347(-) A-I      3'UTR
chr6:90344383(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LYRM2
chr6:90344605(-) A-I exon 3'UTR    21960545   //22327324
chr6:90344706(-) A-I exon 3'UTR    22327324
chr6:90344222(-) A-G exon 3'UTR    21725310   //22484847
chr6:90344605(-) A-G exon 3'UTR    21725310
chr6:90344706(-) A-G exon 3'UTR    21725310   //22484847
chr6:90344175(-) A-G exon 3'UTR    22484847
chr6:90344308(-) A-G exon 3'UTR    22484847
chr6:90344318(-) A-G exon 3'UTR    22484847
chr6:90344569(-) A-G exon 3'UTR    22484847
chr6:90344571(-) A-G exon 3'UTR    22484847
chr6:90344640(-) A-G exon 3'UTR    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LYRM2
chr6:90331223-90331224(-) m6A 3'UTR//intron       -
chr6:90331310-90331311(-) m6A 3'UTR//intron       -
chr6:90331340-90331341(-) m6A 3'UTR//intron       -
chr6:90331362-90331363(-) m6A 3'UTR//intron       -
chr6:90331381-90331382(-) m6A 3'UTR//intron       -
chr6:90331442-90331443(-) m6A 3'UTR//exon       -
chr6:90342321-90342322(-) m6A 3'UTR//intron       27773535
chr6:90342376-90342377(-) m6A 3'UTR//intron       27773535
chr6:90342388-90342389(-) m6A 3'UTR//intron       27773535
chr6:90342393-90342394(-) m6A 3'UTR//intron       27773535
chr6:90342419-90342420(-) m6A 3'UTR//intron       27773535
chr6:90342735-90342736(-) m6A 3'UTR//intron       22608085
chr6:90342903-90342904(-) m6A 3'UTR//intron       24981863//22608085
chr6:90342914-90342915(-) m6A 3'UTR//intron       24981863//22608085
chr6:90343211-90343212(-) m6A 3'UTR//intron       24981863
chr6:90344940-90344941(-) m6A 3'UTR//exon//intron       24981863//22608085
chr6:90345013-90345014(-) m6A 3'UTR//exon//intron       24981863//27773535//22608085
chr6:90345020-90345021(-) m6A 3'UTR//exon//intron       24981863//27773535//22608085
chr6:90345045-90345046(-) m6A 3'UTR//exon//intron       24981863//27773535//22608085
chr6:90345168-90345169(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr6:90345214-90345215(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr6:90345260-90345261(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr6:90345299-90345300(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr6:90345346-90345347(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr6:90345491-90345492(-) m6A 3'UTR//exon//intron       24209618//24981863//27773535//22608085
chr6:90345520-90345521(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr6:90345601-90345602(-) m6A 3'UTR//exon//intron       24981863//27773535//22608085
chr6:90345614-90345615(-) m6A 3'UTR//exon//intron       24981863//27773535//22608085
chr6:90345720-90345721(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//27371828//22608085
chr6:90345797-90345798(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr6:90345832-90345833(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr6:90345848-90345849(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr6:90345905-90345906(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr6:90346134-90346135(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr6:90346144-90346145(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr6:90346159-90346160(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr6:90346231-90346232(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr6:90346259-90346260(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr6:90346310-90346311(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr6:90346399-90346400(-) m6A 3'UTR//exon//intron       24981863//27773535
chr6:90346425-90346426(-) m6A 3'UTR//exon//intron       24981863//27773535
chr6:90346494-90346495(-) m6A 3'UTR//exon//intron       24209618
chr6:90346592-90346593(-) m6A 3'UTR//exon//intron       24209618
chr6:90346615-90346616(-) m6A 3'UTR//exon//intron       24209618//27773535//22608085
chr6:90346708-90346709(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr6:90346737-90346738(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr6:90346766-90346767(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr6:90346827-90346828(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22575960//22608085
chr6:90346849-90346850(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22575960//22608085
chr6:90346859-90346860(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22575960//22608085
chr6:90346923-90346924(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr6:90347014-90347015(-) m6A 3'UTR//CDS//exon//intron       24981863//22608085
chr6:90347453-90347454(-) m6A CDS//exon//intron       24981863
chr6:90347479-90347480(-) m6A CDS//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LYRM2
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hiv1-miR-TAR-5p
Interactor2: LYRM2

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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