Basic Information:

  VIRBase ID:  

VHID00698757

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-5p:  MIMAT0006016          GALNT7:  NM_001375601     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-5p	GALNT7
miRBase Accession/Entrez ID	MIMAT0006016	51809
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GALNAC-T7//GalNAcT7

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GALNT7	chr4:174143524(+) A-I      intronic chr4:174137982(+) A-I      intronic chr4:174137230(+) A-I      intronic chr4:174136508(+) A-I      intronic chr4:174131626(+) A-I      intronic chr4:174136521(+) A-I      intronic chr4:174225453(+) A-I      intronic chr4:174131624(+) A-I      intronic chr4:174136514(+) A-I      intronic chr4:174192822(+) A-I      intronic chr4:174192805(+) A-I      intronic chr4:174143540(+) A-I      intronic chr4:174131074(+) A-I      intronic chr4:174131031(+) A-I      intronic chr4:174131030(+) A-I      intronic chr4:174097104(+) A-I      intronic chr4:174097063(+) A-I      intronic chr4:174097062(+) A-I      intronic chr4:174131037(+) A-I      intronic chr4:174097209(+) A-I      intronic chr4:174097187(+) A-I      intronic chr4:174143480(+) A-I      intronic chr4:174153770(+) A-I      intronic chr4:174137204(+) A-I      intronic chr4:174187288(+) A-I      intronic chr4:174234737(+) A-I      intronic chr4:174137207(+) A-I      intronic chr4:174162320(+) A-I      intronic chr4:174137154(+) A-I      intronic chr4:174097047(+) A-I      intronic chr4:174229778(+) A-I      intronic chr4:174131806(+) A-I      intronic chr4:174131794(+) A-I      intronic chr4:174136616(+) A-I      intronic chr4:174162293(+) A-I      intronic chr4:174097145(+) A-I      intronic chr4:174097168(+) A-I      intronic chr4:174232026(+) A-I      intronic chr4:174131057(+) A-I      intronic chr4:174137195(+) A-I      intronic chr4:174096995(+) A-I      intronic chr4:174137027(+) A-I      intronic chr4:174137050(+) A-I      intronic chr4:174222195(+) A-I      intronic chr4:174162252(+) A-I      intronic chr4:174131190(+) A-I      intronic chr4:174137074(+) A-I      intronic chr4:174162267(+) A-I      intronic chr4:174162266(+) A-I      intronic chr4:174233954(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GALNT7	chr4:174163655(+) A-I intron -    21960545 chr4:174119377(+) A-T intron -    22484847 chr4:174131037(+) A-G intron -    22484847 chr4:174131057(+) A-G intron -    22484847 chr4:174131161(+) A-G intron -    22484847 chr4:174131625(+) A-G intron -    22484847 chr4:174131628(+) A-G intron -    22484847 chr4:174131794(+) A-G intron -    22484847 chr4:174136511(+) A-G intron -    22484847 chr4:174137027(+) A-G intron -    22484847 chr4:174137035(+) A-G intron -    22484847 chr4:174137050(+) A-G intron -    22484847 chr4:174137074(+) A-G intron -    22484847 chr4:174137154(+) A-G intron -    22484847 chr4:174137195(+) A-G intron -    22484847 chr4:174143556(+) A-G intron -    22484847 chr4:174162252(+) A-G intron -    22484847 chr4:174162267(+) A-G intron -    22484847 chr4:174229778(+) A-G intron -    22484847 chr4:174229907(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GALNT7	chr4:174169134-174169135(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr4:174169177-174169178(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085 chr4:174169194-174169195(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085 chr4:174169204-174169205(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085 chr4:174169245-174169246(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr4:174169269-174169270(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr4:174169285-174169286(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr4:174169358-174169359(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr4:174169411-174169412(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr4:174169420-174169421(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr4:174169480-174169481(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr4:174169492-174169493(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr4:174169560-174169561(+) m6A CDS       24284625//24209618//22575960//22608085 chr4:174242882-174242883(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr4:174242920-174242921(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr4:174242927-174242928(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr4:174242937-174242938(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr4:174242977-174242978(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr4:174242984-174242985(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr4:174243005-174243006(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr4:174243015-174243016(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr4:174243062-174243063(+) m6A 3'UTR//exon       24209618//24981863//26404942//22608085 chr4:174243078-174243079(+) m6A 3'UTR//exon       24209618//24981863//26404942//22608085 chr4:174243474-174243475(+) m6A 3'UTR//exon       24981863 chr4:174243548-174243549(+) m6A 3'UTR//exon       24981863 chr4:174243584-174243585(+) m6A 3'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GALNT7	Chromatin K562 cells     - Cytosol HeLa-S3 cells|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-5p
Interactor2: GALNT7

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg