Basic Information:

  VIRBase ID:  

VHID00698609

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-5p:  MIMAT0006016          KCNIP2:  NM_173197     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-5p	KCNIP2
miRBase Accession/Entrez ID	MIMAT0006016	30819
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	KCHIP2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	KCNIP2	chr10:103596188(-) A-I      intronic chr10:103596165(-) A-I      intronic chr10:103596162(-) A-I      intronic chr10:103596189(-) A-I      intronic chr10:103596197(-) A-I      intronic chr10:103596606(-) A-I      intronic chr10:103596618(-) A-I      intronic chr10:103596168(-) A-I      intronic chr10:103596596(-) A-I      intronic chr10:103596206(-) A-I      intronic chr10:103596832(-) A-I      intronic chr10:103596067(-) A-I      intronic chr10:103596220(-) A-I      intronic chr10:103596173(-) A-I      intronic chr10:103596570(-) A-I      intronic chr10:103596854(-) A-I      intronic chr10:103596070(-) A-I      intronic chr10:103596580(-) A-I      intronic chr10:103597304(-) A-I      intronic chr10:103597298(-) A-I      intronic chr10:103596144(-) A-I      intronic chr10:103596778(-) A-I      intronic chr10:103597297(-) A-I      intronic chr10:103597278(-) A-I      intronic chr10:103597238(-) A-I      intronic chr10:103596033(-) A-I      intronic chr10:103596526(-) A-I      intronic chr10:103596175(-) A-I      intronic chr10:103596136(-) A-I      intronic chr10:103596680(-) A-I      intronic chr10:103596135(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	KCNIP2	chr10:103596067(-) A-I intron -    15342557 chr10:103596135(-) A-I intron -    15342557 chr10:103596136(-) A-I intron -    15342557 chr10:103596144(-) A-I intron -    15342557 chr10:103596175(-) A-I intron -    15342557 chr10:103596526(-) A-I intron -    15342557 chr10:103596596(-) A-I intron -    15342557

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	KCNIP2	chr10:103585957-103585958(-) m6A 3'UTR//exon       - chr10:103585965-103585966(-) m6A 3'UTR//exon       - chr10:103588077-103588078(-) m6A exon//intron       - chr10:103588421-103588422(-) m6A CDS//exon       22608085 chr10:103603438-103603439(-) m6A 5'UTR//exon       - chr10:103603455-103603456(-) m6A 5'UTR//exon       - chr10:103603474-103603475(-) m6A 5'UTR//exon       - chr10:103603481-103603482(-) m6A 5'UTR//exon       - chr10:103603493-103603494(-) m6A 5'UTR//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	KCNIP2	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-5p
Interactor2: KCNIP2

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg