Basic Information:

  VIRBase ID:  

VHID00697920

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-5p:  MIMAT0006016          TUBGCP3:  NM_001286277     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-5p	TUBGCP3
miRBase Accession/Entrez ID	MIMAT0006016	10426
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	104p//ALP6//GCP3//Grip104//SPBC98//Spc98//Spc98p

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TUBGCP3	chr13:113157789(-) A-I      intronic chr13:113144746(-) A-I      intronic chr13:113171455(-) A-I      intronic chr13:113172159(-) A-I      intronic chr13:113171500(-) A-I      intronic chr13:113171469(-) A-I      intronic chr13:113144763(-) A-I      intronic chr13:113144773(-) A-I      intronic chr13:113197382(-) A-I      intronic chr13:113239977(-) A-I      intronic chr13:113144632(-) A-I      intronic chr13:113239974(-) A-I      intronic chr13:113235852(-) A-I      intronic chr13:113172097(-) A-I      intronic chr13:113166620(-) A-I      intronic chr13:113144751(-) A-I      intronic chr13:113197381(-) A-I      intronic chr13:113239978(-) A-I      intronic chr13:113144642(-) A-I      intronic chr13:113144708(-) A-I      intronic chr13:113171385(-) A-I      intronic chr13:113197364(-) A-I      intronic chr13:113144707(-) A-I      intronic chr13:113144646(-) A-I      intronic chr13:113171499(-) A-I      intronic chr13:113157054(-) A-I      intronic chr13:113172096(-) A-I      intronic chr13:113172020(-) A-I      intronic chr13:113171511(-) A-I      intronic chr13:113171468(-) A-I      intronic chr13:113172002(-) A-I      intronic chr13:113144672(-) A-I      intronic chr13:113144675(-) A-I      intronic chr13:113171459(-) A-I      intronic chr13:113172161(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TUBGCP3	chr13:113144105-113144106(-) m6A exon//intron       27773535 chr13:113144131-113144132(-) m6A exon//intron       27773535 chr13:113153138-113153139(-) m6A 3'UTR//intron       27773535 chr13:113153373-113153374(-) m6A CDS       24981863 chr13:113179275-113179276(-) Cm intron       - chr13:113210470-113210471(-) m6A CDS       27773535 chr13:113212626-113212627(-) Am CDS//exon       - chr13:113212645-113212646(-) m6A CDS//exon       27773535 chr13:113213657-113213658(-) m6A CDS//exon       27773535 chr13:113242250-113242251(-) m6A CDS       27773536 chr13:113242280-113242281(-) m6A CDS       27773536 chr13:113242319-113242320(-) m6A 5'UTR       27773536//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TUBGCP3	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-5p
Interactor2: TUBGCP3

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg