Basic Information:

  VIRBase ID:  

VHID00697766

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.9374

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-5p:  MIMAT0006016          GIT2:  NM_001330153     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-5p	GIT2
miRBase Accession/Entrez ID	MIMAT0006016	9815
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CAT-2//CAT2//PKL

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GIT2	chr12:110427538(-) A-I      NonSyn:Ile->Val chr12:110379399(-) A-I      intronic chr12:110379503(-) A-I      intronic chr12:110408129(-) A-I      intronic chr12:110379495(-) A-I      intronic chr12:110379491(-) A-I      intronic chr12:110379465(-) A-I      intronic chr12:110379464(-) A-I      intronic chr12:110408158(-) A-I      intronic chr12:110374630(-) A-I      intronic chr12:110379762(-) A-I      intronic chr12:110381979(-) A-I      intronic chr12:110379533(-) A-I      intronic chr12:110377412(-) A-I      intronic chr12:110380271(-) A-I      intronic chr12:110381937(-) A-I      intronic chr12:110381927(-) A-I      intronic chr12:110406619(-) A-I      intronic chr12:110406665(-) A-I      intronic chr12:110406673(-) A-I      intronic chr12:110406681(-) A-I      intronic chr12:110377399(-) A-I      intronic chr12:110397106(-) A-I      intronic chr12:110404268(-) A-I      intronic chr12:110404231(-) A-I      intronic chr12:110404145(-) A-I      intronic chr12:110403976(-) A-I      intronic chr12:110403907(-) A-I      intronic chr12:110403906(-) A-I      intronic chr12:110414571(-) A-I      intronic chr12:110379687(-) A-I      intronic chr12:110379622(-) A-I      intronic chr12:110379601(-) A-I      intronic chr12:110398261(-) A-I      intronic chr12:110379499(-) A-I      intronic chr12:110373263(-) A-I      intronic chr12:110414505(-) A-I      intronic chr12:110394008(-) A-I      intronic chr12:110396084(-) A-I      intronic chr12:110422977(-) A-I      intronic chr12:110381599(-) A-I      intronic chr12:110397055(-) A-I      intronic chr12:110411725(-) A-I      intronic chr12:110380332(-) A-I      intronic chr12:110407460(-) A-I      intronic chr12:110381635(-) A-I      intronic chr12:110411590(-) A-I      intronic chr12:110422502(-) A-I      intronic chr12:110381894(-) A-I      intronic chr12:110380371(-) A-I      intronic chr12:110380313(-) A-I      intronic chr12:110394701(-) A-I      intronic chr12:110381748(-) A-I      intronic chr12:110391418(-) A-I      intronic chr12:110381849(-) A-I      intronic chr12:110397100(-) A-I      intronic chr12:110380303(-) A-I      intronic chr12:110374451(-) A-I      intronic chr12:110380254(-) A-I      intronic chr12:110380250(-) A-I      intronic chr12:110397067(-) A-I      intronic chr12:110380235(-) A-I      intronic chr12:110379912(-) A-I      intronic chr12:110379905(-) A-I      intronic chr12:110379880(-) A-I      intronic chr12:110396214(-) A-I      intronic chr12:110378467(-) A-I      intronic chr12:110379879(-) A-I      intronic chr12:110379848(-) A-I      intronic chr12:110380338(-) A-I      intronic chr12:110381855(-) A-I      intronic chr12:110381891(-) A-I      intronic chr12:110379825(-) A-I      intronic chr12:110381909(-) A-I      intronic chr12:110381920(-) A-I      intronic chr12:110379799(-) A-I      intronic chr12:110398355(-) A-I      intronic chr12:110415310(-) A-I      intronic chr12:110379790(-) A-I      intronic chr12:110413673(-) A-I      intronic chr12:110381230(-) A-I      intronic chr12:110381925(-) A-I      intronic chr12:110377562(-) A-I      intronic chr12:110416052(-) A-I      intronic chr12:110371531(-) A-I      intronic chr12:110430768(-) A-I      intronic chr12:110372346(-) A-I      intronic chr12:110430766(-) A-I      intronic chr12:110430736(-) A-I      intronic chr12:110377554(-) A-I      intronic chr12:110429063(-) A-I      intronic chr12:110425546(-) A-I      intronic chr12:110372350(-) A-I      intronic chr12:110372385(-) A-I      intronic chr12:110425113(-) A-I      intronic chr12:110425070(-) A-I      intronic chr12:110425067(-) A-I      intronic chr12:110424305(-) A-I      intronic chr12:110423859(-) A-I      intronic chr12:110423636(-) A-I      intronic chr12:110423410(-) A-I      intronic chr12:110381229(-) A-I      intronic chr12:110423398(-) A-I      intronic chr12:110422547(-) A-I      intronic chr12:110422525(-) A-I      intronic chr12:110422524(-) A-I      intronic chr12:110422424(-) A-I      intronic chr12:110422416(-) A-I      intronic chr12:110422141(-) A-I      intronic chr12:110372457(-) A-I      intronic chr12:110422067(-) A-I      intronic chr12:110425374(-) A-I      intronic chr12:110380420(-) A-I      intronic chr12:110422012(-) A-I      intronic chr12:110378584(-) A-I      intronic chr12:110378643(-) A-I      intronic chr12:110380357(-) A-I      intronic chr12:110380411(-) A-I      intronic chr12:110377655(-) A-I      intronic chr12:110377667(-) A-I      intronic chr12:110378419(-) A-I      intronic chr12:110378439(-) A-I      intronic chr12:110378455(-) A-I      intronic chr12:110378481(-) A-I      intronic chr12:110378536(-) A-I      intronic chr12:110378537(-) A-I      intronic chr12:110378550(-) A-I      intronic chr12:110378553(-) A-I      intronic chr12:110379567(-) A-I      intronic chr12:110378547(-) A-I      intronic chr12:110378599(-) A-I      intronic chr12:110414486(-) A-I      intronic chr12:110379529(-) A-I      intronic chr12:110379534(-) A-I      intronic chr12:110378608(-) A-I      intronic chr12:110378621(-) A-I      intronic chr12:110379544(-) A-I      intronic chr12:110378627(-) A-I      intronic chr12:110378632(-) A-I      intronic chr12:110417226(-) A-I      intronic chr12:110417218(-) A-I      intronic chr12:110417216(-) A-I      intronic chr12:110379789(-) A-I      intronic chr12:110416104(-) A-I      intronic chr12:110416091(-) A-I      intronic chr12:110381568(-) A-I      intronic chr12:110378671(-) A-I      intronic chr12:110379333(-) A-I      intronic chr12:110379345(-) A-I      intronic chr12:110379394(-) A-I      intronic chr12:110416067(-) A-I      intronic chr12:110415996(-) A-I      intronic chr12:110415570(-) A-I      intronic chr12:110415527(-) A-I      intronic chr12:110415399(-) A-I      intronic chr12:110415385(-) A-I      intronic chr12:110415384(-) A-I      intronic chr12:110372464(-) A-I      intronic chr12:110415259(-) A-I      intronic chr12:110415192(-) A-I      intronic chr12:110415168(-) A-I      intronic chr12:110415167(-) A-I      intronic chr12:110414518(-) A-I      intronic chr12:110372715(-) A-I      intronic chr12:110379424(-) A-I      intronic chr12:110379451(-) A-I      intronic chr12:110414490(-) A-I      intronic chr12:110414472(-) A-I      intronic chr12:110413868(-) A-I      intronic chr12:110412110(-) A-I      intronic chr12:110372745(-) A-I      intronic chr12:110404227(-) A-I      intronic chr12:110372748(-) A-I      intronic chr12:110413639(-) A-I      intronic chr12:110381521(-) A-I      intronic chr12:110411655(-) A-I      intronic chr12:110411643(-) A-I      intronic chr12:110411166(-) A-I      intronic chr12:110411612(-) A-I      intronic chr12:110379750(-) A-I      intronic chr12:110410890(-) A-I      intronic chr12:110410445(-) A-I      intronic chr12:110410444(-) A-I      intronic chr12:110379702(-) A-I      intronic chr12:110410362(-) A-I      intronic chr12:110380394(-) A-I      intronic chr12:110410346(-) A-I      intronic chr12:110410350(-) A-I      intronic chr12:110409717(-) A-I      intronic chr12:110409713(-) A-I      intronic chr12:110409699(-) A-I      intronic chr12:110409687(-) A-I      intronic chr12:110409682(-) A-I      intronic chr12:110417283(-) A-I      intronic chr12:110409677(-) A-I      intronic chr12:110398269(-) A-I      intronic chr12:110372771(-) A-I      intronic chr12:110409641(-) A-I      intronic chr12:110409332(-) A-I      intronic chr12:110409308(-) A-I      intronic chr12:110379690(-) A-I      intronic chr12:110408276(-) A-I      intronic chr12:110379843(-) A-I      intronic chr12:110408140(-) A-I      intronic chr12:110408085(-) A-I      intronic chr12:110407852(-) A-I      intronic chr12:110407828(-) A-I      intronic chr12:110407740(-) A-I      intronic chr12:110396320(-) A-I      intronic chr12:110406403(-) A-I      intronic chr12:110407685(-) A-I      intronic chr12:110407508(-) A-I      intronic chr12:110372839(-) A-I      intronic chr12:110407489(-) A-I      intronic chr12:110377438(-) A-I      intronic chr12:110373330(-) A-I      intronic chr12:110404232(-) A-I      intronic chr12:110377434(-) A-I      intronic chr12:110407466(-) A-I      intronic chr12:110381335(-) A-I      intronic chr12:110406737(-) A-I      intronic chr12:110379501(-) A-I      intronic chr12:110406651(-) A-I      intronic chr12:110373339(-) A-I      intronic chr12:110377421(-) A-I      intronic chr12:110377410(-) A-I      intronic chr12:110373344(-) A-I      intronic chr12:110377408(-) A-I      intronic chr12:110408235(-) A-I      intronic chr12:110373345(-) A-I      intronic chr12:110373352(-) A-I      intronic chr12:110409227(-) A-I      intronic chr12:110373411(-) A-I      intronic chr12:110378566(-) A-I      intronic chr12:110383689(-) A-I      intronic chr12:110379558(-) A-I      intronic chr12:110422508(-) A-I      intronic chr12:110373425(-) A-I      intronic chr12:110375757(-) A-I      intronic chr12:110373426(-) A-I      intronic chr12:110381977(-) A-I      intronic chr12:110381983(-) A-I      intronic chr12:110381992(-) A-I      intronic chr12:110423046(-) A-I      intronic chr12:110391426(-) A-I      intronic chr12:110392499(-) A-I      intronic chr12:110392541(-) A-I      intronic chr12:110409195(-) A-I      intronic chr12:110392580(-) A-I      intronic chr12:110409220(-) A-I      intronic chr12:110404147(-) A-I      intronic chr12:110392585(-) A-I      intronic chr12:110375754(-) A-I      intronic chr12:110392592(-) A-I      intronic chr12:110392621(-) A-I      intronic chr12:110392622(-) A-I      intronic chr12:110392628(-) A-I      intronic chr12:110409325(-) A-I      intronic chr12:110392660(-) A-I      intronic chr12:110412248(-) A-I      intronic chr12:110393053(-) A-I      intronic chr12:110393057(-) A-I      intronic chr12:110393067(-) A-I      intronic chr12:110375570(-) A-I      intronic chr12:110393157(-) A-I      intronic chr12:110393158(-) A-I      intronic chr12:110394656(-) A-I      intronic chr12:110409298(-) A-I      intronic chr12:110394659(-) A-I      intronic chr12:110394740(-) A-I      intronic chr12:110378662(-) A-I      intronic chr12:110425427(-) A-I      intronic chr12:110374455(-) A-I      intronic chr12:110394699(-) A-I      intronic chr12:110394785(-) A-I      intronic chr12:110408109(-) A-I      intronic chr12:110394809(-) A-I      intronic chr12:110395822(-) A-I      intronic chr12:110395846(-) A-I      intronic chr12:110415461(-) A-I      intronic chr12:110396143(-) A-I      intronic chr12:110396158(-) A-I      intronic chr12:110397043(-) A-I      intronic chr12:110397052(-) A-I      intronic chr12:110393756(-) A-I      intronic chr12:110409401(-) A-I      intronic chr12:110408296(-) A-I      intronic chr12:110397033(-) A-I      intronic chr12:110422538(-) A-I      intronic chr12:110406540(-) A-I      intronic chr12:110403868(-) A-I      intronic chr12:110415505(-) A-I      intronic chr12:110396306(-) A-I      intronic chr12:110411083(-) A-I      intronic chr12:110413770(-) A-I      intronic chr12:110422367(-) A-I      intronic chr12:110407760(-) A-I      intronic chr12:110407444(-) A-I      intronic chr12:110410720(-) A-I      intronic chr12:110413737(-) A-I      intronic chr12:110409269(-) A-I      intronic chr12:110408198(-) A-I      intronic chr12:110409404(-) A-I      intronic chr12:110415580(-) A-I      intronic chr12:110417253(-) A-I      intronic chr12:110379496(-) A-I      intronic chr12:110407817(-) A-I      intronic chr12:110396195(-) A-I      intronic chr12:110378428(-) A-I      intronic chr12:110378545(-) A-I      intronic chr12:110407653(-) A-I      intronic chr12:110415133(-) A-I      intronic chr12:110410879(-) A-I      intronic chr12:110407176(-) A-I      intronic chr12:110411602(-) A-I      intronic chr12:110378541(-) A-I      intronic chr12:110425187(-) A-I      intronic chr12:110411219(-) A-I      intronic chr12:110410377(-) A-I      intronic chr12:110423753(-) A-I      intronic chr12:110415172(-) A-I      intronic chr12:110410860(-) A-I      intronic chr12:110412231(-) A-I      intronic chr12:110422075(-) A-I      intronic chr12:110378519(-) A-I      intronic chr12:110404156(-) A-I      intronic chr12:110407639(-) A-I      intronic chr12:110379911(-) A-I      intronic chr12:110407150(-) A-I      intronic chr12:110422518(-) A-I      intronic chr12:110394611(-) A-I      intronic chr12:110411642(-) A-I      intronic chr12:110379829(-) A-I      intronic chr12:110378640(-) A-I      intronic chr12:110423737(-) A-I      intronic chr12:110391844(-) A-I      intronic chr12:110425452(-) A-I      intronic chr12:110407689(-) A-I      intronic chr12:110413047(-) A-I      intronic chr12:110379423(-) A-I      intronic chr12:110404192(-) A-I      intronic chr12:110425407(-) A-I      intronic chr12:110415204(-) A-I      intronic chr12:110424998(-) A-I      intronic chr12:110414558(-) A-I      intronic chr12:110422408(-) A-I      intronic chr12:110412169(-) A-I      intronic chr12:110394625(-) A-I      intronic chr12:110379754(-) A-I      intronic chr12:110415090(-) A-I      intronic chr12:110394747(-) A-I      intronic chr12:110378601(-) A-I      intronic chr12:110392521(-) A-I      intronic chr12:110378602(-) A-I      intronic chr12:110377645(-) A-I      intronic chr12:110421980(-) A-I      intronic chr12:110407676(-) A-I      intronic chr12:110378522(-) A-I      intronic chr12:110404245(-) A-I      intronic chr12:110398334(-) A-I      intronic chr12:110413171(-) A-I      intronic chr12:110409228(-) A-I      intronic chr12:110394600(-) A-I      intronic chr12:110392469(-) A-I      intronic chr12:110415985(-) A-I      intronic chr12:110422117(-) A-I      intronic chr12:110408131(-) A-I      intronic chr12:110407463(-) A-I      intronic chr12:110425476(-) A-I      intronic chr12:110413741(-) A-I      intronic chr12:110416167(-) A-I      intronic chr12:110410447(-) A-I      intronic chr12:110425492(-) A-I      intronic chr12:110394007(-) A-I      intronic chr12:110423864(-) A-I      intronic chr12:110416061(-) A-I      intronic chr12:110403899(-) A-I      intronic chr12:110409300(-) A-I      intronic chr12:110410663(-) A-I      intronic chr12:110411218(-) A-I      intronic chr12:110381981(-) A-I      intronic chr12:110408719(-) A-I      intronic chr12:110415221(-) A-I      intronic chr12:110415993(-) A-I      intronic chr12:110423880(-) A-I      intronic chr12:110413149(-) A-I      intronic chr12:110380211(-) A-I      intronic chr12:110379525(-) A-I      intronic chr12:110415233(-) A-I      intronic chr12:110408134(-) A-I      intronic chr12:110408042(-) A-I      intronic chr12:110422135(-) A-I      intronic chr12:110407175(-) A-I      intronic chr12:110426264(-) A-I      intronic chr12:110415565(-) A-I      intronic chr12:110422390(-) A-I      intronic chr12:110423791(-) A-I      intronic chr12:110413848(-) A-I      intronic chr12:110415479(-) A-I      intronic chr12:110405730(-) A-I      intronic chr12:110381206(-) A-I      intronic chr12:110404121(-) A-I      intronic chr12:110415148(-) A-I      intronic chr12:110416160(-) A-I      intronic chr12:110406431(-) A-I      intronic chr12:110425361(-) A-I      intronic chr12:110408297(-) A-I      intronic chr12:110391396(-) A-I      intronic chr12:110423698(-) A-I      intronic chr12:110416065(-) A-I      intronic chr12:110378493(-) A-I      intronic chr12:110411735(-) A-I      intronic chr12:110413847(-) A-I      intronic chr12:110415984(-) A-I      intronic chr12:110423036(-) A-I      intronic chr12:110422191(-) A-I      intronic chr12:110425364(-) A-I      intronic chr12:110398303(-) A-I      intronic chr12:110393686(-) A-I      intronic chr12:110411845(-) A-I      intronic chr12:110414680(-) A-I      intronic chr12:110422320(-) A-I      intronic chr12:110424380(-) A-I      intronic chr12:110394639(-) A-I      intronic chr12:110416026(-) A-I      intronic chr12:110408864(-) A-I      intronic chr12:110413864(-) A-I      intronic chr12:110409310(-) A-I      intronic chr12:110425387(-) A-I      intronic chr12:110416070(-) A-I      intronic chr12:110379849(-) A-I      intronic chr12:110415990(-) A-I      intronic chr12:110408176(-) A-I      intronic chr12:110408054(-) A-I      intronic chr12:110393898(-) A-I      intronic chr12:110392996(-) A-I      intronic chr12:110381985(-) A-I      intronic chr12:110420583(-) A-I      intronic chr12:110413692(-) A-I      intronic chr12:110380363(-) A-I      intronic chr12:110380277(-) A-I      intronic chr12:110409301(-) A-I      intronic chr12:110425080(-) A-I      intronic chr12:110403898(-) A-I      intronic chr12:110409304(-) A-I      intronic chr12:110411125(-) A-I      intronic chr12:110391346(-) A-I      intronic chr12:110391332(-) A-I      intronic chr12:110404093(-) A-I      intronic chr12:110378468(-) A-I      intronic chr12:110422428(-) A-I      intronic chr12:110395495(-) A-I      intronic chr12:110415094(-) A-I      intronic chr12:110391349(-) A-I      intronic chr12:110416025(-) A-I      intronic chr12:110422470(-) A-I      intronic chr12:110413081(-) A-I      intronic chr12:110411681(-) A-I      intronic chr12:110415544(-) A-I      intronic chr12:110413111(-) A-I      intronic chr12:110378502(-) A-I      intronic chr12:110425410(-) A-I      intronic chr12:110392538(-) A-I      intronic chr12:110404110(-) A-I      intronic chr12:110411723(-) A-I      intronic chr12:110425453(-) A-I      intronic chr12:110378482(-) A-I      intronic chr12:110408186(-) A-I      intronic chr12:110381952(-) A-I      intronic chr12:110422304(-) A-I      intronic chr12:110424395(-) A-I      intronic chr12:110404451(-) A-I      intronic chr12:110403938(-) A-I      intronic chr12:110415095(-) A-I      intronic chr12:110416056(-) A-I      intronic chr12:110409523(-) A-I      intronic chr12:110392447(-) A-I      intronic chr12:110413803(-) A-I      intronic chr12:110373410(-) A-I      intronic chr12:110391350(-) A-I      intronic chr12:110404150(-) A-I      intronic chr12:110409236(-) A-I      intronic chr12:110416130(-) A-I      intronic chr12:110403886(-) A-I      intronic chr12:110391303(-) A-I      intronic chr12:110410563(-) A-I      intronic chr12:110391370(-) A-I      intronic chr12:110380299(-) A-I      intronic chr12:110408241(-) A-I      intronic chr12:110397146(-) A-I      intronic chr12:110422108(-) A-I      intronic chr12:110380193(-) A-I      intronic chr12:110425545(-) A-I      intronic chr12:110410359(-) A-I      intronic chr12:110409165(-) A-I      intronic chr12:110372678(-) A-I      intronic chr12:110379673(-) A-I      intronic chr12:110409632(-) A-I      intronic chr12:110413674(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GIT2	chr12:110391303(-) A-I intron -    15342557 chr12:110391346(-) A-I intron -    15342557 chr12:110391349(-) A-I intron -    15342557 chr12:110391350(-) A-I intron -    15342557 chr12:110391396(-) A-I intron -    15342557 chr12:110378541(-) A-I intron -    22327324 chr12:110378547(-) A-I intron -    22327324 chr12:110378601(-) A-I intron -    22327324 chr12:110378643(-) A-I intron -    22327324 chr12:110381925(-) A-I intron -    22327324 chr12:110381952(-) A-I intron -    22327324 chr12:110391350(-) A-G intron -    22484847 chr12:110403899(-) A-G intron -    22484847 chr12:110404121(-) A-G intron -    22484847 chr12:110404147(-) A-G intron -    22484847 chr12:110408054(-) A-G intron -    22484847 chr12:110408131(-) A-G intron -    22484847 chr12:110410663(-) A-G intron -    22484847 chr12:110413737(-) A-G intron -    22484847 chr12:110413741(-) A-G intron -    22484847 chr12:110413770(-) A-G intron -    22484847 chr12:110416025(-) A-G intron -    22484847 chr12:110392521(-) A-G intron -    22484847 chr12:110392538(-) A-G intron -    22484847 chr12:110394600(-) A-G intron -    22484847 chr12:110394639(-) A-G intron -    22484847 chr12:110394740(-) A-G intron -    22484847 chr12:110394747(-) A-G intron -    22484847 chr12:110395495(-) A-G intron -    22484847 chr12:110396306(-) A-G intron -    22484847 chr12:110398269(-) A-G intron -    22484847 chr12:110398334(-) A-G intron -    22484847 chr12:110403868(-) A-G intron -    22484847 chr12:110403886(-) A-G intron -    22484847 chr12:110403938(-) A-G intron -    22484847 chr12:110404245(-) A-G intron -    22484847 chr12:110407760(-) A-G intron -    22484847 chr12:110408109(-) A-G intron -    22484847 chr12:110408186(-) A-G intron -    22484847 chr12:110408198(-) A-G intron -    22484847 chr12:110408297(-) A-G intron -    22484847 chr12:110409269(-) A-G intron -    22484847 chr12:110409300(-) A-G intron -    22484847 chr12:110409301(-) A-G intron -    22484847 chr12:110409310(-) A-G intron -    22484847 chr12:110409632(-) A-G intron -    22484847 chr12:110410377(-) A-G intron -    22484847 chr12:110410720(-) A-G intron -    22484847 chr12:110411083(-) A-G intron -    22484847 chr12:110411218(-) A-G intron -    22484847 chr12:110411219(-) A-G intron -    22484847 chr12:110413171(-) A-G intron -    22484847 chr12:110413848(-) A-G intron -    22484847 chr12:110414486(-) A-G intron -    22484847 chr12:110415094(-) A-G intron -    22484847 chr12:110415095(-) A-G intron -    22484847 chr12:110416160(-) A-G intron -    22484847 chr12:110421980(-) A-G intron -    22484847 chr12:110422108(-) A-G intron -    22484847 chr12:110422117(-) A-G intron -    22484847 chr12:110422135(-) A-G intron -    22484847 chr12:110422371(-) G-A intron -    22484847 chr12:110422390(-) A-G intron -    22484847 chr12:110422470(-) A-G intron -    22484847 chr12:110422538(-) A-G intron -    22484847 chr12:110424395(-) A-G intron -    22484847 chr12:110424998(-) A-G intron -    22484847 chr12:110425080(-) A-G intron -    22484847 chr12:110425187(-) A-G intron -    22484847 chr12:110425364(-) A-G intron -    22484847 chr12:110425407(-) A-G intron -    22484847 chr12:110425452(-) A-G intron -    22484847 chr12:110425453(-) A-G intron -    22484847 chr12:110425476(-) A-G intron -    22484847 chr12:110425492(-) A-G intron -    22484847 chr12:110425545(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GIT2	chr12:110367768-110367769(-) m6A 3'UTR       27773535 chr12:110367886-110367887(-) m6A 3'UTR       24981863//27773535//22608085 chr12:110367898-110367899(-) m6A 3'UTR       24981863//27773535//22608085 chr12:110367978-110367979(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr12:110368003-110368004(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr12:110368079-110368080(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:110368089-110368090(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:110368105-110368106(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:110368268-110368269(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr12:110368409-110368410(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr12:110368416-110368417(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr12:110368482-110368483(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr12:110368490-110368491(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr12:110368538-110368539(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr12:110368642-110368643(-) m6A 3'UTR       24284625//24209618 chr12:110368802-110368803(-) m6A 3'UTR       24284625//24981863//27773535 chr12:110368956-110368957(-) m6A 3'UTR       24981863 chr12:110369776-110369777(-) m6A 3'UTR       24981863 chr12:110369905-110369906(-) m6A 3'UTR       24981863 chr12:110369944-110369945(-) m6A 3'UTR       27773535 chr12:110369982-110369983(-) m6A 3'UTR       27773535 chr12:110369996-110369997(-) m6A 3'UTR       27773535 chr12:110370082-110370083(-) m6A 3'UTR       27773535 chr12:110370419-110370420(-) m6A 3'UTR       27773535 chr12:110370443-110370444(-) m6A 3'UTR       27773535 chr12:110370463-110370464(-) m6A 3'UTR       27773535 chr12:110370481-110370482(-) m6A 3'UTR       27773535 chr12:110370653-110370654(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085 chr12:110370668-110370669(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085 chr12:110370688-110370689(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085 chr12:110370713-110370714(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085 chr12:110370792-110370793(-) m6A CDS       24284625//24981863//27773535//22608085 chr12:110370900-110370901(-) m6A CDS//exon       24284625//24981863//27773535 chr12:110370913-110370914(-) m6A CDS//exon       24284625//27773535 chr12:110370970-110370971(-) m6A CDS//exon       27773535 chr12:110370992-110370993(-) m6A CDS//exon       27773535 chr12:110376192-110376193(-) m6A CDS//exon       24981863//27773535 chr12:110376229-110376230(-) m6A CDS//exon       24981863//27773535 chr12:110376243-110376244(-) m6A CDS//exon       24981863//27773535 chr12:110376248-110376249(-) m6A CDS//exon       24981863//27773535 chr12:110376303-110376304(-) m6A CDS//exon       24981863//27773535 chr12:110376313-110376314(-) m6A CDS//exon       24981863//27773535 chr12:110385220-110385221(-) m6A 3'UTR//CDS//exon//intron       27773535 chr12:110385239-110385240(-) m6A 3'UTR//CDS//exon//intron       27773535 chr12:110385270-110385271(-) m6A 3'UTR//CDS//exon//intron       27773535 chr12:110385280-110385281(-) m6A 3'UTR//CDS//exon//intron       27773535 chr12:110385302-110385303(-) m6A 3'UTR//CDS//exon//intron       27773535 chr12:110385321-110385322(-) m6A 3'UTR//exon//intron       27773535 chr12:110385339-110385340(-) m6A 3'UTR//exon//intron       27773535 chr12:110386359-110386360(-) m6A 3'UTR//exon//intron       24284625//24981863//28052920//27773535//27371828//22608085 chr12:110386421-110386422(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//27371828//22608085 chr12:110386429-110386430(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//27371828//22608085 chr12:110386484-110386485(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//27371828//22608085 chr12:110386490-110386491(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//27371828//22608085 chr12:110386504-110386505(-) m6A 3'UTR//exon//intron       24981863//27773535//27371828//22608085 chr12:110389094-110389095(-) m6A CDS//exon//intron       27773535//27371828 chr12:110390356-110390357(-) m6A intron       27773535//27371828 chr12:110390910-110390911(-) m6A CDS//exon       24981863//27773535 chr12:110390925-110390926(-) m6A CDS//exon       24981863//27773535 chr12:110390939-110390940(-) m6A CDS//exon       24981863//27773535 chr12:110390981-110390982(-) m6A CDS//exon       24981863//27773535 chr12:110391015-110391016(-) m6A CDS//exon       24981863//27773535 chr12:110391038-110391039(-) m6A CDS//exon       24981863//27773535 chr12:110391119-110391120(-) m6A exon//intron       27773535 chr12:110405294-110405295(-) m6A CDS//exon       24981863 chr12:110418760-110418761(-) m6A CDS//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GIT2	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-5p
Interactor2: GIT2

Evidence Support:

Strong-Evidence	Luciferase reporter assay//Western blot
Weak-Evidence	Microarray
Support Database	ViRBase//VmiReg

References:

[1]PMID	21133815	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	293T cells	Interactor2 expression	Downregulation
Description	Microarray analysis of RNA isolated from TAR transfected cells using an Affymetrix human focus array identified 18 human genes that were downregulated and 14 genes that were upregulated. Further validation of four of these genes showed possible links to apoptosis and cell survival including ERCC1 (excision repair cross complementing-group 1), PIASg (protein inhibitor of acti-vated STATg), GIT2 (GPCR interacting protein) and IER3 (intermediate early response 3).

[2]PMID	19220914	Target region	None
Source	ViRBase//VmiReg	Interactor1 expression	None
Tissue or cell line	293T cells	Interactor2 expression	None
Description	While there was no change in the expression level between mock and TAR D transfections, ERCC1, PIAS-gama, GIT2 and IER3 were all down-regulated in the presence of TAR-WT when normalized to actin. This suggests that the TAR 5'miRNA is more likely the function.