Basic Information:

  VIRBase ID:  

VHID00697696

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-5p:  MIMAT0006016          SEC24C:  NM_004922     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-5p	SEC24C
miRBase Accession/Entrez ID	MIMAT0006016	9632
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SEC24C	chr10:75512144(+) A-I      intronic chr10:75511949(+) A-I      intronic chr10:75512156(+) A-I      intronic chr10:75512565(+) A-I      intronic chr10:75512116(+) A-I      intronic chr10:75511979(+) A-I      intronic chr10:75517056(+) A-I      intronic chr10:75518803(+) A-I      intronic chr10:75511199(+) A-I      intronic chr10:75518795(+) A-I      intronic chr10:75513019(+) A-I      intronic chr10:75514017(+) A-I      intronic chr10:75515696(+) A-I      intronic chr10:75516617(+) A-I      intronic chr10:75515884(+) A-I      intronic chr10:75518793(+) A-I      intronic chr10:75517837(+) A-I      intronic chr10:75513271(+) A-I      intronic chr10:75515819(+) A-I      intronic chr10:75511992(+) A-I      intronic chr10:75515790(+) A-I      intronic chr10:75515360(+) A-I      intronic chr10:75517943(+) A-I      intronic chr10:75516417(+) A-I      intronic chr10:75518763(+) A-I      intronic chr10:75515278(+) A-I      intronic chr10:75513200(+) A-I      intronic chr10:75512462(+) A-I      intronic chr10:75505328(+) A-I      intronic chr10:75513918(+) A-I      intronic chr10:75512461(+) A-I      intronic chr10:75515784(+) A-I      intronic chr10:75512531(+) A-I      intronic chr10:75515739(+) A-I      intronic chr10:75515714(+) A-I      intronic chr10:75512009(+) A-I      intronic chr10:75512564(+) A-I      intronic chr10:75515256(+) A-I      intronic chr10:75511885(+) A-I      intronic chr10:75515795(+) A-I      intronic chr10:75513315(+) A-I      intronic chr10:75508778(+) A-I      intronic chr10:75515258(+) A-I      intronic chr10:75508769(+) A-I      intronic chr10:75507660(+) A-I      intronic chr10:75505859(+) A-I      intronic chr10:75516946(+) A-I      intronic chr10:75516533(+) A-I      intronic chr10:75505807(+) A-I      intronic chr10:75505771(+) A-I      intronic chr10:75513298(+) A-I      intronic chr10:75515832(+) A-I      intronic chr10:75516476(+) A-I      intronic chr10:75505658(+) A-I      intronic chr10:75505473(+) A-I      intronic chr10:75518883(+) A-I      intronic chr10:75512569(+) A-I      intronic chr10:75514046(+) A-I      intronic chr10:75511928(+) A-I      intronic chr10:75511192(+) A-I      intronic chr10:75516762(+) A-I      intronic chr10:75516568(+) A-I      intronic chr10:75516539(+) A-I      intronic chr10:75517811(+) A-I      intronic chr10:75517608(+) A-I      intronic chr10:75517782(+) A-I      intronic chr10:75515355(+) A-I      intronic chr10:75513953(+) A-I      intronic chr10:75512937(+) A-I      intronic chr10:75515341(+) A-I      intronic chr10:75513172(+) A-I      intronic chr10:75513173(+) A-I      intronic chr10:75514878(+) A-I      intronic chr10:75513084(+) A-I      intronic chr10:75517817(+) A-I      intronic chr10:75517828(+) A-I      intronic chr10:75517833(+) A-I      intronic chr10:75517834(+) A-I      intronic chr10:75514122(+) A-I      intronic chr10:75515807(+) A-I      intronic chr10:75517850(+) A-I      intronic chr10:75513281(+) A-I      intronic chr10:75517594(+) A-I      intronic chr10:75515710(+) A-I      intronic chr10:75517894(+) A-I      intronic chr10:75512445(+) A-I      intronic chr10:75517835(+) A-I      intronic chr10:75528141(+) A-I      intronic chr10:75513086(+) A-I      intronic chr10:75512121(+) A-I      intronic chr10:75514155(+) A-I      intronic chr10:75517100(+) A-I      intronic chr10:75515633(+) A-I      intronic chr10:75515709(+) A-I      intronic chr10:75513274(+) A-I      intronic chr10:75514848(+) A-I      intronic chr10:75515793(+) A-I      intronic chr10:75512557(+) A-I      intronic chr10:75513258(+) A-I      intronic chr10:75514659(+) A-I      intronic chr10:75516786(+) A-I      intronic chr10:75517520(+) A-I      intronic chr10:75515158(+) A-I      intronic chr10:75516618(+) A-I      intronic chr10:75505327(+) A-I      intronic chr10:75517832(+) A-I      intronic chr10:75516908(+) A-I      intronic chr10:75512856(+) A-I      intronic chr10:75505437(+) A-I      intronic chr10:75511911(+) A-I      intronic chr10:75514892(+) A-I      intronic chr10:75515850(+) A-I      intronic chr10:75514637(+) A-I      intronic chr10:75515671(+) A-I      intronic chr10:75517945(+) A-I      intronic chr10:75505343(+) A-I      intronic chr10:75514735(+) A-I      intronic chr10:75517599(+) A-I      intronic chr10:75515871(+) A-I      intronic chr10:75514023(+) A-I      intronic chr10:75512021(+) A-I      intronic chr10:75517187(+) A-I      intronic chr10:75514011(+) A-I      intronic chr10:75513062(+) A-I      intronic chr10:75512025(+) A-I      intronic chr10:75512150(+) A-I      intronic chr10:75515727(+) A-I      intronic chr10:75517117(+) A-I      intronic chr10:75517033(+) A-I      intronic chr10:75516810(+) A-I      intronic chr10:75513406(+) A-I      intronic chr10:75512523(+) A-I      intronic chr10:75513404(+) A-I      intronic chr10:75516855(+) A-I      intronic chr10:75512120(+) A-I      intronic chr10:75516523(+) A-I      intronic chr10:75515344(+) A-I      intronic chr10:75518794(+) A-I      intronic chr10:75515180(+) A-I      intronic chr10:75515181(+) A-I      intronic chr10:75513997(+) A-I      intronic chr10:75517872(+) A-I      intronic chr10:75517280(+) A-I      intronic chr10:75516542(+) A-I      intronic chr10:75517519(+) A-I      intronic chr10:75512103(+) A-I      intronic chr10:75517942(+) A-I      intronic chr10:75516630(+) A-I      intronic chr10:75512019(+) A-I      intronic chr10:75514744(+) A-I      intronic chr10:75516934(+) A-I      intronic chr10:75515272(+) A-I      intronic chr10:75514731(+) A-I      intronic chr10:75515288(+) A-I      intronic chr10:75512117(+) A-I      intronic chr10:75516381(+) A-I      intronic chr10:75516639(+) A-I      intronic chr10:75513194(+) A-I      intronic chr10:75517081(+) A-I      intronic chr10:75512570(+) A-I      intronic chr10:75515844(+) A-I      intronic chr10:75505708(+) A-I      intronic chr10:75516548(+) A-I      intronic chr10:75512990(+) A-I      intronic chr10:75516787(+) A-I      intronic chr10:75515312(+) A-I      intronic chr10:75509402(+) A-I      intronic chr10:75514008(+) A-I      intronic chr10:75517053(+) A-I      intronic chr10:75513010(+) A-I      intronic chr10:75513155(+) A-I      intronic chr10:75513917(+) A-I      intronic chr10:75515775(+) A-I      intronic chr10:75517208(+) A-I      intronic chr10:75517771(+) A-I      intronic chr10:75511997(+) A-I      intronic chr10:75507384(+) A-I      intronic chr10:75505899(+) A-I      intronic chr10:75513267(+) A-I      intronic chr10:75505368(+) A-I      intronic chr10:75511903(+) A-I      intronic chr10:75512885(+) A-I      intronic chr10:75513170(+) A-I      intronic chr10:75512859(+) A-I      intronic chr10:75511924(+) A-I      intronic chr10:75513264(+) A-I      intronic chr10:75513330(+) A-I      intronic chr10:75517975(+) A-I      intronic chr10:75515830(+) A-I      intronic chr10:75517487(+) A-I      intronic chr10:75513958(+) A-I      intronic chr10:75518129(+) A-I      intronic chr10:75517178(+) A-I      intronic chr10:75511600(+) A-I      intronic chr10:75512999(+) A-I      intronic chr10:75516769(+) A-I      intronic chr10:75513911(+) A-I      intronic chr10:75513246(+) A-I      intronic chr10:75517491(+) A-I      intronic chr10:75515269(+) A-I      intronic chr10:75513996(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SEC24C	chr10:75513246(+) A-I intron -    22327324 chr10:75517187(+) A-I intron -    22327324 chr10:75513267(+) A-I intron -    21960545 chr10:75513170(+) A-G intron -    22484847 chr10:75513996(+) A-G intron -    22484847 chr10:75513997(+) A-G intron -    22484847 chr10:75514023(+) A-G intron -    22484847 chr10:75514731(+) A-G intron -    22484847 chr10:75515158(+) A-G intron -    22484847 chr10:75515180(+) A-G intron -    22484847 chr10:75515775(+) A-G intron -    22484847 chr10:75516417(+) A-G intron -    22484847 chr10:75517053(+) A-G intron -    22484847 chr10:75517056(+) A-G intron -    22484847 chr10:75517520(+) A-G intron -    22484847 chr10:75517599(+) A-G intron -    22484847 chr10:75517811(+) A-G intron -    22484847 chr10:75517832(+) A-G intron -    22484847 chr10:75517943(+) A-G intron -    22484847 chr10:75517945(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SEC24C	chr10:75506454-75506455(+) m6A 5'UTR//intron       24284625//24981863 chr10:75506749-75506750(+) m6A CDS//exon       24284625 chr10:75519992-75519993(+) m6A 3'UTR//CDS       24284625//22575960 chr10:75520088-75520089(+) m6A 3'UTR//CDS       24284625 chr10:75520480-75520481(+) m6A 3'UTR//CDS       24284625 chr10:75530421-75530422(+) m6A 3'UTR//intron       - chr10:75530726-75530727(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr10:75530734-75530735(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr10:75530773-75530774(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr10:75530806-75530807(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr10:75530924-75530925(+) m6A 3'UTR       24981863//26404942//22608085 chr10:75531155-75531156(+) m6A 3'UTR       - chr10:75531183-75531184(+) m6A 3'UTR       - chr10:75531285-75531286(+) m6A 3'UTR       24981863//26404942 chr10:75531468-75531469(+) m6A 3'UTR       24284625//24981863 chr10:75531632-75531633(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:75531706-75531707(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr10:75531778-75531779(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:75531842-75531843(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SEC24C	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-5p
Interactor2: SEC24C

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg