Basic Information:

  VIRBase ID:  

VHID00696286

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-5p:  MIMAT0006016          CELSR3:  NM_001407     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-5p	CELSR3
miRBase Accession/Entrez ID	MIMAT0006016	1951
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ADGRC3//CDHF11//EGFL1//FMI1//HFMI1//MEGF2//RESDA1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CELSR3	chr3:48674274-48674275(-) m6A 3'UTR//exon       - chr3:48674367-48674368(-) m6A 3'UTR//exon       - chr3:48674541-48674542(-) m6A 3'UTR//exon       24981863 chr3:48674548-48674549(-) m6A 3'UTR//exon       24981863 chr3:48674582-48674583(-) m6A 3'UTR//exon       24981863 chr3:48675280-48675281(-) m6A 3'UTR//exon       - chr3:48675428-48675429(-) m6A 3'UTR//exon       24284625//24981863//27371828 chr3:48675439-48675440(-) m6A 3'UTR//exon       24284625//24981863//27371828 chr3:48675574-48675575(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828 chr3:48675613-48675614(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828 chr3:48677112-48677113(-) m6A CDS//exon       24284625//25456834//27371828 chr3:48677286-48677287(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr3:48677294-48677295(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr3:48677331-48677332(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr3:48677403-48677404(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr3:48677421-48677422(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr3:48677442-48677443(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr3:48677469-48677470(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr3:48677526-48677527(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr3:48677631-48677632(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr3:48677799-48677800(-) m6A CDS//exon       24284625//25456834//24981863//27371828//22575960//22608085 chr3:48677807-48677808(-) m6A CDS//exon       24284625//27371828//22575960 chr3:48677950-48677951(-) m6A CDS//exon       24284625//27371828 chr3:48677979-48677980(-) m6A CDS//exon       24284625//27371828 chr3:48678021-48678022(-) m6A exon//intron       24284625//27371828 chr3:48678059-48678060(-) m6A exon//intron       27371828 chr3:48678815-48678816(-) m6A CDS//exon       24284625 chr3:48678851-48678852(-) m6A CDS//exon       24284625 chr3:48678882-48678883(-) m6A CDS//exon       24284625 chr3:48679363-48679364(-) m6A CDS//exon       - chr3:48679513-48679514(-) m6A exon//intron       27773535 chr3:48680705-48680706(-) m6A exon//intron       - chr3:48680782-48680783(-) m6A exon//intron       27773535 chr3:48683209-48683210(-) m6A CDS       25456834//22608085 chr3:48683215-48683216(-) m6A CDS       25456834//22608085 chr3:48683268-48683269(-) m6A CDS       25456834//24981863//22608085 chr3:48683278-48683279(-) m6A CDS       25456834//24981863//22608085 chr3:48683534-48683535(-) m6A CDS       25456834//24981863//22608085 chr3:48683571-48683572(-) m6A CDS       22608085 chr3:48684333-48684334(-) m6A CDS       24284625 chr3:48685741-48685742(-) m6A CDS       27371828 chr3:48685792-48685793(-) m6A CDS       27371828 chr3:48685847-48685848(-) m6A CDS       27371828 chr3:48685854-48685855(-) m6A CDS       27371828 chr3:48690450-48690451(-) m6A CDS       27371828 chr3:48693779-48693780(-) m6A CDS       24284625//27773536 chr3:48693791-48693792(-) m6A CDS       24284625//27773536 chr3:48694229-48694230(-) m6A CDS       24284625//25456834//24981863 chr3:48694240-48694241(-) m6A CDS       24284625//25456834//24981863 chr3:48694372-48694373(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//22575960 chr3:48694687-48694688(-) m6A CDS       - chr3:48696363-48696364(-) m6A CDS       24284625//24981863 chr3:48696397-48696398(-) m6A CDS       24284625//24981863 chr3:48696513-48696514(-) m6A CDS       24284625//24981863//22608085 chr3:48696675-48696676(-) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr3:48696698-48696699(-) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr3:48696714-48696715(-) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr3:48696738-48696739(-) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr3:48696789-48696790(-) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr3:48696922-48696923(-) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr3:48696945-48696946(-) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr3:48696990-48696991(-) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr3:48697239-48697240(-) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr3:48697263-48697264(-) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr3:48697299-48697300(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:48697308-48697309(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:48697341-48697342(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:48697371-48697372(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:48697608-48697609(-) m6A CDS       24284625//24981863//22575960//22608085 chr3:48697722-48697723(-) m6A CDS       24284625//24981863//22575960//22608085 chr3:48697878-48697879(-) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr3:48697923-48697924(-) m6A CDS       24284625//25456834//22608085 chr3:48697962-48697963(-) m6A CDS       24284625//22608085 chr3:48698139-48698140(-) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr3:48698241-48698242(-) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr3:48698294-48698295(-) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr3:48698349-48698350(-) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr3:48698504-48698505(-) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr3:48698562-48698563(-) m6A CDS       24284625//25456834//24981863//22608085 chr3:48698746-48698747(-) m6A CDS       24284625 chr3:48698892-48698893(-) m6A CDS       24284625 chr3:48698961-48698962(-) m6A CDS       24284625//24981863 chr3:48699015-48699016(-) m6A CDS       24284625//24981863//22575960 chr3:48699108-48699109(-) m6A CDS       24284625 chr3:48699135-48699136(-) m6A CDS       24284625 chr3:48699176-48699177(-) m6A CDS       24284625//27773536 chr3:48699268-48699269(-) m6A CDS       24284625//25456834//24981863//27773536//22575960//22608085 chr3:48699307-48699308(-) m6A CDS       24284625//25456834//24981863//27773536//22575960//22608085 chr3:48699369-48699370(-) m6A CDS       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr3:48699385-48699386(-) m6A CDS       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr3:48699490-48699491(-) m6A CDS       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr3:48699546-48699547(-) m6A CDS       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr3:48699567-48699568(-) m6A CDS       24284625//25456834//24981863//27773536//22575960//22608085 chr3:48699629-48699630(-) m6A CDS       24284625//25456834//24981863//27773536//22608085 chr3:48699634-48699635(-) m6A CDS       24284625//25456834//24981863//27773536//22608085 chr3:48699683-48699684(-) m6A CDS       24284625//25456834//24981863//22608085 chr3:48699689-48699690(-) m6A CDS       24284625//25456834//24981863//22608085 chr3:48699694-48699695(-) m6A CDS       24284625//25456834//24981863//22608085 chr3:48699731-48699732(-) m6A CDS       24284625//25456834//24981863 chr3:48700188-48700189(-) m6A 5'UTR       24284625//25456834 chr3:48700342-48700343(-) m6A 5'UTR       24284625//25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CELSR3	Chromatin HCC cell line (HepG2)     - Cytosol HCC cell line (HepG2)|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-5p
Interactor2: CELSR3

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg