Detail Information

Basic Information:


  VIRBase ID:  

VHID00696078

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-5p:           CBLB:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hiv1-miR-TAR-5p CBLB
miRBase
Accession/Entrez ID		 MIMAT0006016 868
Organism Human immunodeficiency virus 1 (HIV-1) Homo sapiens
Category miRNA mRNA
Alias - Cbl-b//Nbla00127//RNF56

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CBLB
chr3:105504879(-) A-I      intronic
chr3:105567799(-) A-I      intronic
chr3:105567809(-) A-I      intronic
chr3:105567816(-) A-I      intronic
chr3:105524392(-) A-I      intronic
chr3:105524396(-) A-I      intronic
chr3:105557005(-) A-I      intronic
chr3:105524400(-) A-I      intronic
chr3:105457978(-) A-I      intronic
chr3:105458781(-) A-I      intronic
chr3:105524401(-) A-I      intronic
chr3:105560014(-) A-I      intronic
chr3:105557042(-) A-I      intronic
chr3:105567828(-) A-I      intronic
chr3:105573754(-) A-I      intronic
chr3:105556989(-) A-I      intronic
chr3:105557041(-) A-I      intronic
chr3:105556994(-) A-I      intronic
chr3:105379160(-) A-I      intronic
chr3:105379178(-) A-I      intronic
chr3:105571834(-) A-I      intronic
chr3:105462290(-) A-I      intronic
chr3:105379105(-) A-I      intronic
chr3:105379112(-) A-I      intronic
chr3:105379164(-) A-I      intronic
chr3:105379170(-) A-I      intronic
chr3:105379192(-) A-I      intronic
chr3:105379196(-) A-I      intronic
chr3:105379249(-) A-I      intronic
chr3:105379254(-) A-I      intronic
chr3:105379255(-) A-I      intronic
chr3:105379263(-) A-I      intronic
chr3:105379286(-) A-I      intronic
chr3:105379287(-) A-I      intronic
chr3:105379846(-) A-I      intronic
chr3:105379919(-) A-I      intronic
chr3:105384012(-) A-I      intronic
chr3:105384030(-) A-I      intronic
chr3:105384055(-) A-I      intronic
chr3:105384062(-) A-I      intronic
chr3:105384180(-) A-I      intronic
chr3:105384618(-) A-I      intronic
chr3:105384670(-) A-I      intronic
chr3:105391998(-) A-I      intronic
chr3:105392083(-) A-I      intronic
chr3:105392101(-) A-I      intronic
chr3:105457890(-) A-I      intronic
chr3:105457916(-) A-I      intronic
chr3:105457923(-) A-I      intronic
chr3:105457931(-) A-I      intronic
chr3:105457936(-) A-I      intronic
chr3:105457957(-) A-I      intronic
chr3:105458000(-) A-I      intronic
chr3:105458005(-) A-I      intronic
chr3:105458027(-) A-I      intronic
chr3:105458838(-) A-I      intronic
chr3:105458885(-) A-I      intronic
chr3:105460138(-) A-I      intronic
chr3:105460154(-) A-I      intronic
chr3:105460157(-) A-I      intronic
chr3:105460312(-) A-I      intronic
chr3:105460354(-) A-I      intronic
chr3:105496259(-) A-I      intronic
chr3:105496277(-) A-I      intronic
chr3:105559875(-) A-I      intronic
chr3:105559935(-) A-I      intronic
chr3:105559946(-) A-I      intronic
chr3:105560138(-) A-I      intronic
chr3:105560408(-) A-I      intronic
chr3:105560412(-) A-I      intronic
chr3:105560469(-) A-I      intronic
chr3:105560492(-) A-I      intronic
chr3:105560515(-) A-I      intronic
chr3:105560517(-) A-I      intronic
chr3:105571738(-) A-I      intronic
chr3:105571740(-) A-I      intronic
chr3:105560576(-) A-I      intronic
chr3:105553418(-) A-I      intronic
chr3:105391973(-) A-I      intronic
chr3:105460270(-) A-I      intronic
chr3:105392041(-) A-I      intronic
chr3:105385408(-) A-I      intronic
chr3:105462247(-) A-I      intronic
chr3:105560476(-) A-I      intronic
chr3:105460430(-) A-I      intronic
chr3:105462257(-) A-I      intronic
chr3:105420362(-) A-I      intronic
chr3:105392018(-) A-I      intronic
chr3:105458767(-) A-I      intronic
chr3:105560137(-) A-I      intronic
chr3:105457789(-) A-I      intronic
chr3:105458004(-) A-I      intronic
chr3:105379058(-) A-I      intronic
chr3:105559980(-) A-I      intronic
chr3:105524287(-) A-I      intronic
chr3:105524234(-) A-I      intronic
chr3:105559958(-) A-I      intronic
chr3:105458744(-) A-I      intronic
chr3:105379243(-) A-I      intronic
chr3:105496206(-) A-I      intronic
chr3:105462221(-) A-I      intronic
chr3:105379252(-) A-I      intronic
chr3:105394653(-) A-I      intronic
chr3:105457830(-) A-I      intronic
chr3:105391980(-) A-I      intronic
chr3:105457921(-) A-I      intronic
chr3:105458026(-) A-I      intronic
chr3:105556938(-) A-I      intronic
chr3:105560474(-) A-I      intronic
chr3:105560461(-) A-I      intronic
chr3:105548437(-) A-I      intronic
chr3:105524423(-) A-I      intronic
chr3:105458884(-) A-I      intronic
chr3:105457950(-) A-I      intronic
chr3:105559992(-) A-I      intronic
chr3:105457924(-) A-I      intronic
chr3:105524345(-) A-I      intronic
chr3:105524238(-) A-I      intronic
chr3:105560057(-) A-I      intronic
chr3:105560028(-) A-I      intronic
chr3:105458825(-) A-I      intronic
chr3:105524422(-) A-I      intronic
chr3:105560472(-) A-I      intronic
chr3:105458784(-) A-I      intronic
chr3:105379134(-) A-I      intronic
chr3:105560570(-) A-I      intronic
chr3:105379094(-) A-I      intronic
chr3:105560475(-) A-I      intronic
chr3:105458759(-) A-I      intronic
chr3:105379152(-) A-I      intronic
chr3:105457922(-) A-I      intronic
chr3:105578306(-) A-I      intronic
chr3:105560477(-) A-I      intronic
chr3:105457868(-) A-I      intronic
chr3:105538193(-) A-I      intronic
chr3:105458864(-) A-I      intronic
chr3:105385483(-) A-I      intronic
chr3:105457929(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CBLB
chr3:105450148(-) A-I intron -    21960545
chr3:105450188(-) A-I intron -    21960545
chr3:105567869(-) A-I intron -    21960545
chr3:105568353(-) A-I intron -    21960545
chr3:105441068(-) C-T intron -    22484847
chr3:105457783(-) A-G intron -    22484847
chr3:105457787(-) A-G intron -    22484847
chr3:105457830(-) A-G intron -    22484847
chr3:105457868(-) A-G intron -    22484847
chr3:105457921(-) A-G intron -    22484847
chr3:105457922(-) A-G intron -    22484847
chr3:105457924(-) A-G intron -    22484847
chr3:105457929(-) A-G intron -    22484847
chr3:105458744(-) A-G intron -    22484847
chr3:105458759(-) A-G intron -    22484847
chr3:105458932(-) A-G intron -    22484847
chr3:105469051(-) C-T intron -    22484847
chr3:105559958(-) A-G intron -    22484847
chr3:105559972(-) A-G intron -    22484847
chr3:105560057(-) A-G intron -    22484847
chr3:105560064(-) A-G intron -    22484847
chr3:105560137(-) A-G intron -    22484847
chr3:105560435(-) A-G intron -    22484847
chr3:105560461(-) A-G intron -    22484847
chr3:105560472(-) A-G intron -    22484847
chr3:105560474(-) A-G intron -    22484847
chr3:105560475(-) A-G intron -    22484847
chr3:105560476(-) A-G intron -    22484847
chr3:105560477(-) A-G intron -    22484847
chr3:105560561(-) A-G intron -    22484847
chr3:105560570(-) A-G intron -    22484847
chr3:105560576(-) A-G intron -    22484847
chr3:105578507(-) T-A intron -    22484847
chr3:105504799(-) A-G intron -    22484847
chr3:105504874(-) A-G intron -    22484847
chr3:105505299(-) A-G intron -    22484847
chr3:105505300(-) A-G intron -    22484847
chr3:105505367(-) A-G intron -    22484847
chr3:105567829(-) A-G intron -    22484847
chr3:105568383(-) A-G intron -    22484847
chr3:105568384(-) A-G intron -    22484847
chr3:105568422(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CBLB
chr3:105374821-105374822(-) m6A 3'UTR       27773535
chr3:105375021-105375022(-) m6A 3'UTR       27773535
chr3:105375042-105375043(-) m6A 3'UTR       27773535
chr3:105375095-105375096(-) m6A 3'UTR       27773535
chr3:105375170-105375171(-) m6A 3'UTR       27773535
chr3:105377433-105377434(-) m6A 3'UTR//exon       27773535
chr3:105377542-105377543(-) m6A 3'UTR//exon       24981863//26404942//27773535//22608085
chr3:105377549-105377550(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22608085
chr3:105377587-105377588(-) m6A 3'UTR//exon       24284625//24981863//28052920//26404942//27773535//22608085
chr3:105377661-105377662(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr3:105377745-105377746(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr3:105377797-105377798(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr3:105377804-105377805(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr3:105377948-105377949(-) m6A CDS//exon       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr3:105377999-105378000(-) m6A CDS//exon       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr3:105378025-105378026(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22608085
chr3:105378041-105378042(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22608085
chr3:105378050-105378051(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22608085
chr3:105389102-105389103(-) m6A CDS//exon       27773535
chr3:105389112-105389113(-) m6A CDS//exon       27773535
chr3:105389121-105389122(-) m6A CDS//exon       27773535
chr3:105389214-105389215(-) m6A exon//intron       27773535
chr3:105397332-105397333(-) m6A CDS       27773535
chr3:105397341-105397342(-) m6A CDS       27773535
chr3:105399891-105399892(-) m6A 3'UTR//intron       27773535
chr3:105400296-105400297(-) m6A 3'UTR//intron       27773535
chr3:105400315-105400316(-) m6A 3'UTR//intron       27773535
chr3:105400390-105400391(-) m6A 3'UTR//CDS//intron       27773535
chr3:105404174-105404175(-) m6A CDS       27773535
chr3:105404265-105404266(-) m6A CDS       27773535
chr3:105404272-105404273(-) m6A CDS       27773535
chr3:105420973-105420974(-) m6A CDS       24284625//27773535
chr3:105421048-105421049(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr3:105421095-105421096(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr3:105421142-105421143(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr3:105421177-105421178(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr3:105421186-105421187(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr3:105421193-105421194(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr3:105421213-105421214(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr3:105421270-105421271(-) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr3:105421279-105421280(-) m6A CDS       24284625//24981863//27773535//22608085
chr3:105423000-105423001(-) m6A CDS       27773535
chr3:105438954-105438955(-) m6A CDS       27773535
chr3:105495370-105495371(-) m6A CDS       26404942//27773535
chr3:105572260-105572261(-) m6A CDS       24981863//26404942//27773535
chr3:105572271-105572272(-) m6A CDS       24981863//26404942//27773535
chr3:105572307-105572308(-) m6A CDS       24981863//26404942//27773535
chr3:105572385-105572386(-) m6A CDS       26404942//27773535//22608085
chr3:105572484-105572485(-) m6A CDS       26404942//27773535
chr3:105572502-105572503(-) m6A CDS       26404942//27773535
chr3:105586260-105586261(-) m6A CDS       26404942
chr3:105586276-105586277(-) m6A CDS       26404942
chr3:105586288-105586289(-) m6A CDS       26404942
chr3:105586319-105586320(-) m6A CDS       26404942
chr3:105586395-105586396(-) m6A CDS       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CBLB
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hiv1-miR-TAR-5p
Interactor2: CBLB

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...