Basic Information:

  VIRBase ID:  

VHID00694414

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-H1:  MIMAT0004480          AGAP3:  NM_001281300     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-H1	AGAP3
miRBase Accession/Entrez ID	MIMAT0004480	116988
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AGAP-3//CENTG3//cnt-g3//CRAG//MRIP-1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	AGAP3	chr7:150797831(+) A-I      intronic chr7:150797814(+) A-I      intronic chr7:150796336(+) A-I      intronic chr7:150796315(+) A-I      intronic chr7:150796309(+) A-I      intronic chr7:150796283(+) A-I      intronic chr7:150796273(+) A-I      intronic chr7:150796268(+) A-I      intronic chr7:150794356(+) A-I      intronic chr7:150804694(+) A-I      intronic chr7:150794498(+) A-I      intronic chr7:150796184(+) A-I      intronic chr7:150796176(+) A-I      intronic chr7:150803722(+) A-I      intronic chr7:150796084(+) A-I      intronic chr7:150794467(+) A-I      intronic chr7:150794466(+) A-I      intronic chr7:150794457(+) A-I      intronic chr7:150794389(+) A-I      intronic chr7:150794363(+) A-I      intronic chr7:150810030(+) A-I      intronic chr7:150810060(+) A-I      intronic chr7:150810095(+) A-I      intronic chr7:150803710(+) A-I      intronic chr7:150803682(+) A-I      intronic chr7:150795575(+) A-I      intronic chr7:150794362(+) A-I      intronic chr7:150793735(+) A-I      intronic chr7:150793699(+) A-I      intronic chr7:150793664(+) A-I      intronic chr7:150793653(+) A-I      intronic chr7:150793640(+) A-I      intronic chr7:150795593(+) A-I      intronic chr7:150791786(+) A-I      intronic chr7:150787884(+) A-I      intronic chr7:150787871(+) A-I      intronic chr7:150787869(+) A-I      intronic chr7:150787868(+) A-I      intronic chr7:150799848(+) A-I      intronic chr7:150799860(+) A-I      intronic chr7:150792055(+) A-I      intronic chr7:150792062(+) A-I      intronic chr7:150792065(+) A-I      intronic chr7:150799912(+) A-I      intronic chr7:150803628(+) A-I      intronic chr7:150803443(+) A-I      intronic chr7:150802755(+) A-I      intronic chr7:150799903(+) A-I      intronic chr7:150799893(+) A-I      intronic chr7:150799850(+) A-I      intronic chr7:150795698(+) A-I      intronic chr7:150795679(+) A-I      intronic chr7:150803714(+) A-I      intronic chr7:150799836(+) A-I      intronic chr7:150799832(+) A-I      intronic chr7:150795617(+) A-I      intronic chr7:150799820(+) A-I      intronic chr7:150799606(+) A-I      intronic chr7:150797849(+) A-I      intronic chr7:150799886(+) A-I      intronic chr7:150799883(+) A-I      intronic chr7:150799864(+) A-I      intronic chr7:150799802(+) A-I      intronic chr7:150795589(+) A-I      intronic chr7:150794608(+) A-I      intronic chr7:150804349(+) A-I      intronic chr7:150799591(+) A-I      intronic chr7:150796023(+) A-I      intronic chr7:150797854(+) A-I      intronic chr7:150804696(+) A-I      intronic chr7:150804237(+) A-I      intronic chr7:150799658(+) A-I      intronic chr7:150794013(+) A-I      intronic chr7:150803519(+) A-I      intronic chr7:150795642(+) A-I      intronic chr7:150799614(+) A-I      intronic chr7:150797737(+) A-I      intronic chr7:150803669(+) A-I      intronic chr7:150794540(+) A-I      intronic chr7:150795290(+) A-I      intronic chr7:150794547(+) A-I      intronic chr7:150794476(+) A-I      intronic chr7:150804235(+) A-I      intronic chr7:150795901(+) A-I      intronic chr7:150799941(+) A-I      intronic chr7:150790252(+) A-I      intronic chr7:150804182(+) A-I      intronic chr7:150793960(+) A-I      intronic chr7:150791863(+) A-I      intronic chr7:150796003(+) A-I      intronic chr7:150795619(+) A-I      intronic chr7:150794119(+) A-I      intronic chr7:150795987(+) A-I      intronic chr7:150797818(+) A-I      intronic chr7:150800048(+) A-I      intronic chr7:150790475(+) A-I      intronic chr7:150804276(+) A-I      intronic chr7:150793741(+) A-I      intronic chr7:150791788(+) A-I      intronic chr7:150793811(+) A-I      intronic chr7:150794432(+) A-I      intronic chr7:150796085(+) A-I      intronic chr7:150809766(+) A-I      intronic chr7:150794434(+) A-I      intronic chr7:150802742(+) A-I      intronic chr7:150794469(+) A-I      intronic chr7:150799796(+) A-I      intronic chr7:150797728(+) A-I      intronic chr7:150804636(+) A-I      intronic chr7:150802798(+) A-I      intronic chr7:150804590(+) A-I      intronic chr7:150797663(+) A-I      intronic chr7:150804631(+) A-I      intronic chr7:150795284(+) A-I      intronic chr7:150802763(+) A-I      intronic chr7:150802587(+) A-I      intronic chr7:150794133(+) A-I      intronic chr7:150803500(+) A-I      intronic chr7:150795693(+) A-I      intronic chr7:150794037(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	AGAP3	chr7:150790447(+) T-C intron -    22484847 chr7:150791788(+) A-G intron -    22484847 chr7:150793741(+) A-G intron -    22484847 chr7:150793766(+) A-G intron -    22484847 chr7:150793771(+) A-G intron -    22484847 chr7:150793811(+) A-G intron -    22484847 chr7:150793960(+) A-G intron -    22484847 chr7:150794499(+) A-G intron -    22484847 chr7:150795597(+) A-G intron -    22484847 chr7:150795633(+) A-G intron -    22484847 chr7:150796023(+) A-G intron -    22484847 chr7:150796085(+) A-G intron -    22484847 chr7:150797657(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	AGAP3	chr7:150783003-150783004(+) m6A 5'UTR//exon       25456834 chr7:150783014-150783015(+) m6A 5'UTR//exon       25456834 chr7:150783060-150783061(+) m6A 5'UTR//exon       25456834 chr7:150783125-150783126(+) m6A exon//intron       25456834 chr7:150783832-150783833(+) m6A CDS//intron       25456834 chr7:150784126-150784127(+) m6A CDS//intron       22575960 chr7:150784128-150784129(+) Cm CDS//intron       - chr7:150813677-150813678(+) m6A exon//intron       - chr7:150813707-150813708(+) m6A exon//intron       - chr7:150813730-150813731(+) m6A exon//intron       - chr7:150817163-150817164(+) m6A CDS//exon//intron       24284625//24981863 chr7:150817613-150817614(+) m6A CDS//exon//intron       24981863 chr7:150819877-150819878(+) m6A 3'UTR//intron       24284625//25456834//24981863//22575960//22608085 chr7:150819905-150819906(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr7:150819947-150819948(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr7:150819992-150819993(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr7:150820002-150820003(+) m6A 3'UTR//intron       24284625//25456834//24981863//22575960//22608085 chr7:150820071-150820072(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr7:150820113-150820114(+) m1A 3'UTR//intron       26863410 chr7:150820250-150820251(+) m6A 3'UTR//intron       24284625//24209618//25456834 chr7:150820356-150820357(+) m6A 3'UTR//intron       24284625//24209618//24981863//22575960 chr7:150820513-150820514(+) m6A 3'UTR//intron       24284625//22575960 chr7:150828191-150828192(+) m6A exon//intron       25456834 chr7:150828225-150828226(+) m6A exon//intron       25456834 chr7:150828230-150828231(+) m6A exon//intron       25456834 chr7:150831499-150831500(+) m6A CDS//exon       - chr7:150831531-150831532(+) m6A CDS//exon       - chr7:150833430-150833431(+) m6A exon//intron       - chr7:150837166-150837167(+) m6A CDS//exon//intron       - chr7:150840463-150840464(+) m6A CDS//exon       24284625 chr7:150840599-150840600(+) m6A CDS//exon       24284625 chr7:150840908-150840909(+) m6A CDS//exon       24284625//24209618//22608085 chr7:150841061-150841062(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr7:150841077-150841078(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr7:150841104-150841105(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr7:150841130-150841131(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr7:150841261-150841262(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr7:150841266-150841267(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr7:150841302-150841303(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr7:150841364-150841365(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960//22608085 chr7:150841437-150841438(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22608085 chr7:150841504-150841505(+) m6A 3'UTR//exon       27773535 chr7:150841509-150841510(+) m6A 3'UTR//exon       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hiv1-miR-H1	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	AGAP3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-H1
Interactor2: AGAP3

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg