Detail Information

Basic Information:


  VIRBase ID:  

VHID00693699

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-H1:           APOL3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hiv1-miR-H1 APOL3
miRBase
Accession/Entrez ID		 MIMAT0004480 80833
Organism Human immunodeficiency virus 1 (HIV-1) Homo sapiens
Category miRNA mRNA
Alias - apoL-III//APOLIII//CG121//CG12_1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR APOL3
chr22:36548946(-) A-I      intronic
chr22:36556045(-) A-I      intronic
chr22:36548953(-) A-I      intronic
chr22:36552310(-) A-I      intronic
chr22:36548900(-) A-I      intronic
chr22:36548913(-) A-I      intronic
chr22:36552315(-) A-I      intronic
chr22:36552313(-) A-I      intronic
chr22:36556106(-) A-I      intronic
chr22:36547780(-) A-I      intronic
chr22:36549035(-) A-I      intronic
chr22:36549027(-) A-I      intronic
chr22:36546055(-) A-I      intronic
chr22:36552341(-) A-I      intronic
chr22:36546141(-) A-I      intronic
chr22:36546059(-) A-I      intronic
chr22:36556132(-) A-I      intronic
chr22:36546846(-) A-I      intronic
chr22:36552254(-) A-I      intronic
chr22:36546725(-) A-I      intronic
chr22:36556189(-) A-I      intronic
chr22:36556173(-) A-I      intronic
chr22:36549076(-) A-I      intronic
chr22:36556110(-) A-I      intronic
chr22:36556107(-) A-I      intronic
chr22:36548952(-) A-I      intronic
chr22:36549038(-) A-I      intronic
chr22:36547889(-) A-I      intronic
chr22:36546811(-) A-I      intronic
chr22:36553930(-) A-I      intronic
chr22:36548994(-) A-I      intronic
chr22:36548991(-) A-I      intronic
chr22:36556026(-) A-I      intronic
chr22:36547818(-) A-I      intronic
chr22:36547799(-) A-I      intronic
chr22:36546106(-) A-I      intronic
chr22:36548945(-) A-I      intronic
chr22:36554678(-) A-I      intronic
chr22:36547782(-) A-I      intronic
chr22:36556109(-) A-I      intronic
chr22:36556068(-) A-I      intronic
chr22:36546887(-) A-I      intronic
chr22:36556108(-) A-I      intronic
chr22:36552271(-) A-I      intronic
chr22:36556158(-) A-I      intronic
chr22:36556067(-) A-I      intronic
chr22:36556032(-) A-I      intronic
chr22:36554772(-) A-I      intronic
chr22:36548922(-) A-I      intronic
chr22:36554700(-) A-I      intronic
chr22:36545957(-) A-I      intronic
chr22:36545969(-) A-I      intronic
chr22:36546090(-) A-I      intronic
chr22:36546900(-) A-I      intronic
chr22:36546149(-) A-I      intronic
chr22:36548891(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED APOL3
chr22:36547782(-) A-G intron -    22484847
chr22:36547818(-) A-G intron -    22484847
chr22:36547889(-) A-G intron -    22484847
chr22:36556002(-) A-G intron -    22484847
chr22:36556058(-) A-G intron -    22484847
chr22:36556067(-) A-G intron -    22484847
chr22:36556068(-) A-G intron -    22484847
chr22:36556110(-) A-G intron -    22484847
chr22:36556173(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase APOL3
chr22:36536392-36536393(-) m6A 3'UTR       28052920
chr22:36536454-36536455(-) m6A 3'UTR       28052920
chr22:36536484-36536485(-) m6A 3'UTR       28052920
chr22:36536518-36536519(-) m6A 3'UTR       28052920
chr22:36536532-36536533(-) m6A 3'UTR       28052920
chr22:36536554-36536555(-) m6A 3'UTR       28052920
chr22:36536560-36536561(-) m6A 3'UTR       28052920
chr22:36536577-36536578(-) m6A 3'UTR       28052920
chr22:36536624-36536625(-) m6A 3'UTR       -
chr22:36536849-36536850(-) m6A 3'UTR       28052920//27371828
chr22:36536871-36536872(-) m6A 3'UTR       28052920//27371828
chr22:36536932-36536933(-) m6A 3'UTR       28052920//27371828
chr22:36536978-36536979(-) m6A 3'UTR       28052920
chr22:36537019-36537020(-) m6A 3'UTR       28052920
chr22:36537240-36537241(-) m6A 3'UTR       27371828
chr22:36537588-36537589(-) m6A 3'UTR//CDS       28052920//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hiv1-miR-H1
Exosome Jurkat-derived T cell line (J77cl20)     21505438
APOL3
Exosome Blood     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hiv1-miR-H1
Interactor2: APOL3

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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