Basic Information:

  VIRBase ID:  

VHID00693624

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-H1:  MIMAT0004480          SPSB1:  NM_025106     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-H1	SPSB1
miRBase Accession/Entrez ID	MIMAT0004480	80176
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SSB-1//SSB1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SPSB1	chr1:9426933(+) A-I      intronic chr1:9361287(+) A-I      intronic chr1:9395377(+) A-I      intronic chr1:9395375(+) A-I      intronic chr1:9395365(+) A-I      intronic chr1:9378987(+) A-I      intronic chr1:9370488(+) A-I      intronic chr1:9359678(+) A-I      intronic chr1:9369787(+) A-I      intronic chr1:9359656(+) A-I      intronic chr1:9425190(+) A-I      intronic chr1:9389740(+) A-I      intronic chr1:9392212(+) A-I      intronic chr1:9372093(+) A-I      intronic chr1:9395712(+) A-I      intronic chr1:9372112(+) A-I      intronic chr1:9393619(+) A-I      intronic chr1:9369807(+) A-I      intronic chr1:9423411(+) A-I      intronic chr1:9425246(+) A-I      intronic chr1:9374088(+) A-I      intronic chr1:9367116(+) A-I      intronic chr1:9369813(+) A-I      intronic chr1:9369518(+) A-I      intronic chr1:9372098(+) A-I      intronic chr1:9369781(+) A-I      intronic chr1:9369516(+) A-I      intronic chr1:9391574(+) A-I      intronic chr1:9374124(+) A-I      intronic chr1:9392151(+) A-I      intronic chr1:9360010(+) A-I      intronic chr1:9359947(+) A-I      intronic chr1:9421330(+) A-I      intronic chr1:9395289(+) A-I      intronic chr1:9370607(+) A-I      intronic chr1:9426907(+) A-I      intronic chr1:9395738(+) A-I      intronic chr1:9359442(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SPSB1	chr1:9354611-9354612(+) m6A 5'UTR//intron       24284625//24209618 chr1:9411500-9411501(+) m6A 5'UTR//intron       24284625 chr1:9415811-9415812(+) m6A 5'UTR       24284625//24209618 chr1:9415891-9415892(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr1:9415948-9415949(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr1:9415980-9415981(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr1:9415987-9415988(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:9415996-9415997(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:9416074-9416075(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22608085 chr1:9416119-9416120(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22608085 chr1:9416270-9416271(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:9416377-9416378(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:9416413-9416414(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:9416427-9416428(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:9416447-9416448(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:9416457-9416458(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:9416494-9416495(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:9416508-9416509(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:9416531-9416532(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:9416558-9416559(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:9416573-9416574(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:9416636-9416637(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:9427723-9427724(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:9427743-9427744(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:9427790-9427791(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:9427796-9427797(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:9427893-9427894(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:9427906-9427907(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:9428073-9428074(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr1:9428145-9428146(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942 chr1:9428156-9428157(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942 chr1:9428170-9428171(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942 chr1:9428177-9428178(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942 chr1:9428292-9428293(+) m6A 3'UTR       24284625 chr1:9428791-9428792(+) m6A 3'UTR       24284625 chr1:9428861-9428862(+) m6A 3'UTR       24284625 chr1:9429458-9429459(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hiv1-miR-H1	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	SPSB1	Exosome Blood     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-H1
Interactor2: SPSB1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg