Basic Information:

  VIRBase ID:  

VHID00693146

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-H1:  MIMAT0004480          FAM3A:  NM_001282312     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-H1	FAM3A
miRBase Accession/Entrez ID	MIMAT0004480	60343
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	2.19//DLD//DXS560S//XAP-7

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FAM3A	chrX:153743145(-) A-I      intronic chrX:153741916(-) A-I      intronic chrX:153741939(-) A-I      intronic chrX:153741947(-) A-I      intronic chrX:153741951(-) A-I      intronic chrX:153742705(-) A-I      intronic chrX:153742706(-) A-I      intronic chrX:153743067(-) A-I      intronic chrX:153743077(-) A-I      intronic chrX:153741742(-) A-I      intronic chrX:153741842(-) A-I      intronic chrX:153742581(-) A-I      intronic chrX:153742728(-) A-I      intronic chrX:153741737(-) A-I      intronic chrX:153742860(-) A-I      intronic chrX:153741902(-) A-I      intronic chrX:153741832(-) A-I      intronic chrX:153741872(-) A-I      intronic chrX:153741711(-) A-I      intronic chrX:153741699(-) A-I      intronic chrX:153741910(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FAM3A	chrX:153742795(-) A-G intron -    22484847 chrX:153742796(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FAM3A	chrX:153734618-153734619(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960 chrX:153734674-153734675(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960 chrX:153734709-153734710(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960 chrX:153734747-153734748(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960 chrX:153735074-153735075(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chrX:153735104-153735105(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chrX:153735124-153735125(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chrX:153735182-153735183(-) Gm 3'UTR//CDS//exon       - chrX:153735226-153735227(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536//22575960 chrX:153735552-153735553(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960 chrX:153735588-153735589(-) m6A 3'UTR//CDS//exon       24284625//24209618//27773535//27371828 chrX:153735646-153735647(-) m6A 3'UTR//CDS//exon       24284625//27773535//27371828 chrX:153736636-153736637(-) m6A 3'UTR//CDS//exon       24284625//27773536 chrX:153736657-153736658(-) m6A 3'UTR//CDS//exon       24284625//27773536 chrX:153736810-153736811(-) m6A 3'UTR//CDS//exon//intron       24284625//27773536 chrX:153737306-153737307(-) m6A exon//intron       27773535 chrX:153737376-153737377(-) m6A exon//intron       27773535 chrX:153744097-153744098(-) m6A 5'UTR//exon       24284625//27773536 chrX:153744139-153744140(-) m6A 5'UTR//exon//intron       24284625//27773536 chrX:153744164-153744165(-) m6A 5'UTR//exon//intron       24284625//27371828//27773536 chrX:153744240-153744241(-) m6A 5'UTR//exon//intron       24284625//27371828//27773536 chrX:153744371-153744372(-) m6A 5'UTR//exon       24284625//27371828//27773536 chrX:153744473-153744474(-) m6A 5'UTR//exon       24284625//24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hiv1-miR-H1	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	FAM3A	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-H1
Interactor2: FAM3A

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg