Basic Information:

  VIRBase ID:  

VHID00692414

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-H1:  MIMAT0004480          CROT:  NM_001243745     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-H1	CROT
miRBase Accession/Entrez ID	MIMAT0004480	54677
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	COT

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CROT	chr7:86994555(+) A-I      intronic chr7:86985408(+) A-I      intronic chr7:86984699(+) A-I      intronic chr7:86984690(+) A-I      intronic chr7:86984533(+) A-I      intronic chr7:87001087(+) A-I      intronic chr7:86999556(+) A-I      intronic chr7:86999554(+) A-I      intronic chr7:87001098(+) A-I      intronic chr7:86999592(+) A-I      intronic chr7:87001148(+) A-I      intronic chr7:86999625(+) A-I      intronic chr7:87001195(+) A-I      intronic chr7:87001058(+) A-I      intronic chr7:86995067(+) A-I      intronic chr7:86985330(+) A-I      intronic chr7:86999761(+) A-I      intronic chr7:86985396(+) A-I      intronic chr7:86999734(+) A-I      intronic chr7:87028808(+) A-I      3'UTR chr7:87028672(+) A-I      3'UTR chr7:87028533(+) A-I      3'UTR chr7:86999632(+) A-I      intronic chr7:86999562(+) A-I      intronic chr7:87001205(+) A-I      intronic chr7:87001230(+) A-I      intronic chr7:86999560(+) A-I      intronic chr7:87001052(+) A-I      intronic chr7:86999599(+) A-I      intronic chr7:87001092(+) A-I      intronic chr7:86980356(+) A-I      intronic chr7:87001105(+) A-I      intronic chr7:87001155(+) A-I      intronic chr7:86999668(+) A-I      intronic chr7:87001235(+) A-I      intronic chr7:86999708(+) A-I      intronic chr7:86994991(+) A-I      intronic chr7:86995157(+) A-I      intronic chr7:86994993(+) A-I      intronic chr7:86994703(+) A-I      intronic chr7:87001152(+) A-I      intronic chr7:86999563(+) A-I      intronic chr7:86986177(+) A-I      intronic chr7:87001147(+) A-I      intronic chr7:87013087(+) A-I      intronic chr7:86999709(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CROT	chr7:87001052(+) A-I intron -    22327324 chr7:87001148(+) A-I intron -    21960545   //22327324 chr7:87001058(+) A-I intron -    21960545 chr7:86985330(+) A-G intron -    22484847 chr7:86986177(+) A-G intron -    22484847 chr7:86994703(+) A-G intron -    22484847 chr7:86994975(+) A-G intron -    22484847 chr7:86994993(+) A-G intron -    22484847 chr7:86995067(+) A-G intron -    22484847 chr7:86999562(+) A-G intron -    22484847 chr7:86999563(+) A-G intron -    22484847 chr7:86999599(+) A-G intron -    22484847 chr7:86999708(+) A-G intron -    22484847 chr7:86999709(+) A-G intron -    22484847 chr7:86999733(+) A-G intron -    22484847 chr7:86999734(+) A-G intron -    22484847 chr7:86999737(+) A-G intron -    22484847 chr7:87001051(+) A-G intron -    22484847 chr7:87001058(+) A-G intron -    22484847 chr7:87001091(+) A-G intron -    22484847 chr7:87001092(+) A-G intron -    22484847 chr7:87001098(+) A-G intron -    22484847 chr7:87001145(+) A-G intron -    22484847 chr7:87001147(+) A-G intron -    22484847 chr7:87001148(+) A-G intron -    22484847 chr7:87001173(+) A-G intron -    22484847 chr7:87001235(+) A-G intron -    22484847 chr7:87001265(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CROT	chr7:86975079-86975080(+) m6A 5'UTR       24981863 chr7:86975689-86975690(+) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hiv1-miR-H1	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	CROT	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-H1
Interactor2: CROT

Evidence Support:

Prediction-Evidence	RNAHybrid//Targetscan
Support Database	VmiReg