Basic Information:

  VIRBase ID:  

VHID00692051

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-H1:  MIMAT0004480          SNX12:  NM_001256187     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-H1	SNX12
miRBase Accession/Entrez ID	MIMAT0004480	29934
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SNX12	chrX:70282387(-) A-I      intronic chrX:70285649(-) A-I      intronic chrX:70282360(-) A-I      intronic chrX:70282416(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SNX12	chrX:70280613-70280614(-) m6A 3'UTR//exon//intron       24209618 chrX:70280668-70280669(-) m6A 3'UTR//exon//intron       24209618//24981863 chrX:70280751-70280752(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//22608085 chrX:70280836-70280837(-) Y 3'UTR//exon//intron       26075521 chrX:70280893-70280894(-) m6A CDS//exon//intron       24284625 chrX:70282794-70282795(-) m6A CDS//exon       22575960 chrX:70288103-70288104(-) m6A CDS//exon       27773535//22575960 chrX:70288148-70288149(-) m6A CDS//exon       22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hiv1-miR-H1	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	SNX12	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-H1
Interactor2: SNX12

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA
Support Database	RepTar//VmiReg