Basic Information:

  VIRBase ID:  

VHID00690089

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-H1:  MIMAT0004480          TSPYL1:  NM_003309     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-H1	TSPYL1
miRBase Accession/Entrez ID	MIMAT0004480	7259
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	TSPYL

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TSPYL1	chr6:116596835(-) A-I      3'UTR chr6:116596851(-) A-I      3'UTR chr6:116596880(-) A-I      3'UTR chr6:116596839(-) A-I      3'UTR chr6:116596841(-) A-I      3'UTR chr6:116596863(-) A-I      3'UTR chr6:116596869(-) A-I      3'UTR chr6:116596877(-) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TSPYL1	chr6:116598420-116598421(-) m6A 3'UTR       24981863//27773535//22608085 chr6:116598536-116598537(-) m6A 3'UTR       24284625//24981863//28052920//27773535//27371828//22608085 chr6:116598585-116598586(-) m6A 3'UTR       24284625//24981863//28052920//27773535//27371828//22608085 chr6:116598590-116598591(-) m6A 3'UTR       24284625//24981863//28052920//27773535//27371828//22608085 chr6:116598630-116598631(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr6:116598793-116598794(-) m6A 3'UTR       27773535 chr6:116598859-116598860(-) m6A 3'UTR       24284625//27773535 chr6:116598945-116598946(-) m6A 3'UTR       24284625//24209618//24981863 chr6:116599236-116599237(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:116599257-116599258(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:116599346-116599347(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:116599372-116599373(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr6:116599626-116599627(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr6:116599845-116599846(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr6:116599878-116599879(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr6:116599884-116599885(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr6:116599907-116599908(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22608085 chr6:116599995-116599996(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085 chr6:116600010-116600011(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085 chr6:116600044-116600045(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:116600054-116600055(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:116600060-116600061(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:116600139-116600140(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:116600187-116600188(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr6:116600274-116600275(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr6:116600279-116600280(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr6:116600304-116600305(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr6:116600340-116600341(-) m1A CDS       26863196 chr6:116600524-116600525(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr6:116600827-116600828(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536 chr6:116600950-116600951(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22608085 chr6:116600965-116600966(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hiv1-miR-H1	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	TSPYL1	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-H1
Interactor2: TSPYL1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg