Basic Information:

  VIRBase ID:  

VHID00688666

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-H1:  MIMAT0004480          GALNT1:  NM_001384444     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-H1	GALNT1
miRBase Accession/Entrez ID	MIMAT0004480	2589
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GALNAC-T1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GALNT1	chr18:33274741(+) A-I      intronic chr18:33274742(+) A-I      intronic chr18:33290303(+) A-I      3'UTR chr18:33275908(+) A-I      intronic chr18:33274716(+) A-I      intronic chr18:33250176(+) A-I      intronic chr18:33250205(+) A-I      intronic chr18:33250240(+) A-I      intronic chr18:33250266(+) A-I      intronic chr18:33249117(+) A-I      intronic chr18:33251311(+) A-I      intronic chr18:33251260(+) A-I      intronic chr18:33249013(+) A-I      intronic chr18:33250070(+) A-I      intronic chr18:33249098(+) A-I      intronic chr18:33278704(+) A-I      intronic chr18:33278354(+) A-I      intronic chr18:33278687(+) A-I      intronic chr18:33281165(+) A-I      intronic chr18:33250133(+) A-I      intronic chr18:33249111(+) A-I      intronic chr18:33278312(+) A-I      intronic chr18:33251326(+) A-I      intronic chr18:33251314(+) A-I      intronic chr18:33249084(+) A-I      intronic chr18:33249125(+) A-I      intronic chr18:33249090(+) A-I      intronic chr18:33278322(+) A-I      intronic chr18:33281163(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GALNT1	chr18:33161759-33161760(+) m6A 5'UTR//intron       24981863 chr18:33207404-33207405(+) m6A 5'UTR//exon//intron       24981863 chr18:33207438-33207439(+) m6A 5'UTR//exon//intron       24981863 chr18:33234547-33234548(+) m6A 5'UTR//exon       24981863 chr18:33243640-33243641(+) m6A 3'UTR//CDS       24981863 chr18:33289609-33289610(+) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr18:33289669-33289670(+) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr18:33289735-33289736(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr18:33289871-33289872(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr18:33289877-33289878(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr18:33289904-33289905(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr18:33289931-33289932(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr18:33289947-33289948(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr18:33289968-33289969(+) Am 3'UTR       - chr18:33290015-33290016(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr18:33290053-33290054(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr18:33290147-33290148(+) m6A 3'UTR       24209618//24981863//26404942//27773535//22608085 chr18:33290189-33290190(+) m6A 3'UTR       24981863//26404942//27773535//22608085 chr18:33290195-33290196(+) m6A 3'UTR       24981863//26404942//27773535//22608085 chr18:33290216-33290217(+) m6A 3'UTR       24981863//26404942//27773535//22608085 chr18:33290241-33290242(+) m6A 3'UTR       24981863//26404942//27773535//22608085 chr18:33290251-33290252(+) m6A 3'UTR       24981863//26404942//27773535//22608085 chr18:33290273-33290274(+) m6A 3'UTR       24981863//26404942//27773535//22608085 chr18:33290278-33290279(+) m6A 3'UTR       24981863//26404942//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hiv1-miR-H1	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	GALNT1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-H1
Interactor2: GALNT1

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg