Detail Information

Basic Information:


  VIRBase ID:  

VHID00684960

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-N367:           PREPL:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hiv1-miR-N367 PREPL
miRBase
Accession/Entrez ID		 MIMAT0004478 9581
Organism Human immunodeficiency virus 1 (HIV-1) Homo sapiens
Category miRNA mRNA
Alias - CMS22

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PREPL
chr2:44579628(-) A-I      intronic
chr2:44545351(-) A-I      3'UTR
chr2:44545341(-) A-I      3'UTR
chr2:44545260(-) A-I      3'UTR
chr2:44545358(-) A-I      3'UTR
chr2:44545297(-) A-I      3'UTR
chr2:44545344(-) A-I      3'UTR
chr2:44545315(-) A-I      3'UTR
chr2:44545335(-) A-I      3'UTR
chr2:44582626(-) A-I      intronic
chr2:44581886(-) A-I      intronic
chr2:44579626(-) A-I      intronic
chr2:44581083(-) A-I      intronic
chr2:44581884(-) A-I      intronic
chr2:44545386(-) A-I      3'UTR
chr2:44545336(-) A-I      3'UTR
chr2:44545313(-) A-I      3'UTR
chr2:44573109(-) A-I      intronic
chr2:44581935(-) A-I      intronic
chr2:44581842(-) A-I      intronic
chr2:44573064(-) A-I      intronic
chr2:44553741(-) A-I      intronic
chr2:44553614(-) A-I      intronic
chr2:44581989(-) A-I      intronic
chr2:44582503(-) A-I      intronic
chr2:44582523(-) A-I      intronic
chr2:44582524(-) A-I      intronic
chr2:44579595(-) A-I      intronic
chr2:44580544(-) A-I      intronic
chr2:44580651(-) A-I      intronic
chr2:44580664(-) A-I      intronic
chr2:44581089(-) A-I      intronic
chr2:44582529(-) A-I      intronic
chr2:44582544(-) A-I      intronic
chr2:44582560(-) A-I      intronic
chr2:44582575(-) A-I      intronic
chr2:44583436(-) A-I      intronic
chr2:44583608(-) A-I      intronic
chr2:44579557(-) A-I      intronic
chr2:44545383(-) A-I      3'UTR
chr2:44545481(-) A-I      3'UTR
chr2:44545332(-) A-I      3'UTR
chr2:44545368(-) A-I      3'UTR
chr2:44545374(-) A-I      3'UTR
chr2:44545292(-) A-I      3'UTR
chr2:44545306(-) A-I      3'UTR
chr2:44545318(-) A-I      3'UTR
chr2:44582642(-) A-I      intronic
chr2:44586371(-) A-I      intronic
chr2:44575271(-) A-I      intronic
chr2:44581281(-) A-I      intronic
chr2:44574252(-) A-I      intronic
chr2:44581120(-) A-I      intronic
chr2:44578282(-) A-I      intronic
chr2:44579616(-) A-I      intronic
chr2:44581088(-) A-I      intronic
chr2:44579430(-) A-I      intronic
chr2:44553746(-) A-I      intronic
chr2:44553729(-) A-I      intronic
chr2:44581878(-) A-I      intronic
chr2:44574253(-) A-I      intronic
chr2:44572499(-) A-I      intronic
chr2:44581904(-) A-I      intronic
chr2:44582674(-) A-I      intronic
chr2:44579521(-) A-I      intronic
chr2:44553690(-) A-I      intronic
chr2:44579620(-) A-I      intronic
chr2:44583563(-) A-I      intronic
chr2:44579439(-) A-I      intronic
chr2:44572759(-) A-I      intronic
chr2:44545458(-) A-I      3'UTR
chr2:44545450(-) A-I      3'UTR
chr2:44545326(-) A-I      3'UTR
chr2:44545449(-) A-I      3'UTR
chr2:44584082(-) A-I      intronic
chr2:44558421(-) A-I      intronic
chr2:44586344(-) A-I      intronic
chr2:44582564(-) A-I      intronic
chr2:44581184(-) A-I      intronic
chr2:44584120(-) A-I      intronic
chr2:44582520(-) A-I      intronic
chr2:44574314(-) A-I      intronic
chr2:44582612(-) A-I      intronic
chr2:44551820(-) A-I      intronic
chr2:44584218(-) A-I      intronic
chr2:44579465(-) A-I      intronic
chr2:44553680(-) A-I      intronic
chr2:44584141(-) A-I      intronic
chr2:44582443(-) A-I      intronic
chr2:44551760(-) A-I      intronic
chr2:44581819(-) A-I      intronic
chr2:44586335(-) A-I      intronic
chr2:44581810(-) A-I      intronic
chr2:44581825(-) A-I      intronic
chr2:44584146(-) A-I      intronic
chr2:44582514(-) A-I      intronic
chr2:44581781(-) A-I      intronic
chr2:44581043(-) A-I      intronic
chr2:44555245(-) A-I      intronic
chr2:44582566(-) A-I      intronic
chr2:44581852(-) A-I      intronic
chr2:44581934(-) A-I      intronic
chr2:44553747(-) A-I      intronic
chr2:44579619(-) A-I      intronic
chr2:44586345(-) A-I      intronic
chr2:44581082(-) A-I      intronic
chr2:44584081(-) A-I      intronic
chr2:44581811(-) A-I      intronic
chr2:44579596(-) A-I      intronic
chr2:44583518(-) A-I      intronic
chr2:44584217(-) A-I      intronic
chr2:44579604(-) A-I      intronic
chr2:44574464(-) A-I      intronic
chr2:44579543(-) A-I      intronic
chr2:44582469(-) A-I      intronic
chr2:44582442(-) A-I      intronic
chr2:44584196(-) A-I      intronic
chr2:44551829(-) A-I      intronic
chr2:44579692(-) A-I      intronic
chr2:44574225(-) A-I      intronic
chr2:44582631(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PREPL
chr2:44582566(-) A-I intron -    21960545
chr2:44584226(-) A-I intron -    21960545
chr2:44579597(-) A-G intron -    22484847
chr2:44579604(-) A-G intron -    22484847
chr2:44579620(-) A-G intron -    22484847
chr2:44579692(-) A-G intron -    22484847
chr2:44581082(-) A-G intron -    22484847
chr2:44581088(-) A-G intron -    22484847
chr2:44581281(-) A-G intron -    22484847
chr2:44581781(-) A-G intron -    22484847
chr2:44581811(-) A-G intron -    22484847
chr2:44581819(-) A-G intron -    22484847
chr2:44581825(-) A-G intron -    22484847
chr2:44581912(-) A-G intron -    22484847
chr2:44581934(-) A-G intron -    22484847
chr2:44581991(-) A-G intron -    22484847
chr2:44582443(-) A-G intron -    22484847
chr2:44582469(-) A-G intron -    22484847
chr2:44582514(-) A-G intron -    22484847
chr2:44582564(-) A-G intron -    22484847
chr2:44582576(-) A-G intron -    22484847
chr2:44582612(-) A-G intron -    22484847
chr2:44582619(-) A-G intron -    22484847
chr2:44582631(-) A-G intron -    22484847
chr2:44582642(-) A-G intron -    22484847
chr2:44582674(-) A-G intron -    22484847
chr2:44582682(-) A-G intron -    22484847
chr2:44583464(-) A-G intron -    22484847
chr2:44583518(-) A-G intron -    22484847
chr2:44583563(-) A-G intron -    22484847
chr2:44583576(-) A-G intron -    22484847
chr2:44583680(-) A-G intron -    22484847
chr2:44583682(-) A-G intron -    22484847
chr2:44584141(-) A-G intron -    22484847
chr2:44584146(-) A-G intron -    22484847
chr2:44584187(-) A-G intron -    22484847
chr2:44584217(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PREPL
chr2:44545234-44545235(-) m6A 3'UTR//intron       24981863
chr2:44545256-44545257(-) m6A 3'UTR//intron       24981863
chr2:44545325-44545326(-) m6A 3'UTR//intron       24981863
chr2:44545938-44545939(-) m6A 3'UTR//intron       27773535
chr2:44546491-44546492(-) m6A 3'UTR       27773535
chr2:44549030-44549031(-) m6A CDS//intron       27773535
chr2:44549880-44549881(-) m6A CDS       27773535
chr2:44549912-44549913(-) m6A CDS       27773535
chr2:44550406-44550407(-) m6A CDS       27773535
chr2:44550443-44550444(-) m6A CDS       27773535
chr2:44550451-44550452(-) m6A CDS       27773535
chr2:44550515-44550516(-) m6A CDS       27773535
chr2:44559632-44559633(-) m6A CDS//intron       24981863
chr2:44559646-44559647(-) m6A CDS//intron       24981863
chr2:44559659-44559660(-) m6A CDS//intron       24981863
chr2:44559672-44559673(-) m6A CDS//intron       24981863
chr2:44559742-44559743(-) m6A CDS//intron       24981863
chr2:44571719-44571720(-) m6A CDS//intron       24981863
chr2:44573444-44573445(-) m6A CDS//exon       24981863//27773535
chr2:44573456-44573457(-) m6A CDS//exon       24981863//27773535
chr2:44573482-44573483(-) m6A 5'UTR//CDS//exon       24981863//27773535
chr2:44573496-44573497(-) m6A 5'UTR//CDS//exon       24981863//27773535
chr2:44573511-44573512(-) m6A 5'UTR//CDS//exon       24981863//27773535
chr2:44574354-44574355(-) m6A exon//intron       24981863//27773535
chr2:44583475-44583476(-) m6A exon//intron       24981863
chr2:44586663-44586664(-) m6A CDS//intron       24981863//27773535
chr2:44586689-44586690(-) m6A CDS//intron       24981863//27773535
chr2:44586779-44586780(-) m6A CDS//intron       24981863//27773535//22608085
chr2:44586841-44586842(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:44586864-44586865(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr2:44586871-44586872(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr2:44586936-44586937(-) m6A 5'UTR//intron       24284625//24981863//27773535//22608085
chr2:44586961-44586962(-) m6A 5'UTR//intron       24284625//24981863//27773535//22608085
chr2:44587065-44587066(-) m6A 5'UTR//intron       24981863//22608085
chr2:44587425-44587426(-) m6A 5'UTR//intron       27773535
chr2:44587508-44587509(-) m6A 5'UTR//intron       27773535
chr2:44588536-44588537(-) m6A 5'UTR//exon//intron       24981863
chr2:44588617-44588618(-) m6A 5'UTR//exon//intron       24981863
chr2:44588628-44588629(-) m6A 5'UTR//exon//intron       24981863
chr2:44588682-44588683(-) m6A 5'UTR//exon       24981863
chr2:44588762-44588763(-) m6A 5'UTR//exon       24981863
chr2:44588772-44588773(-) m6A 5'UTR//exon       24981863
chr2:44588780-44588781(-) m6A 5'UTR//exon       24981863
chr2:44588788-44588789(-) m6A 5'UTR//exon       24981863
chr2:44588823-44588824(-) m6A 5'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PREPL
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hiv1-miR-N367
Topotecan       60700

Interaction Network (The top 100 interactions):


Interactor1: hiv1-miR-N367
Interactor2: PREPL

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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