Basic Information:

  VIRBase ID:  

VHID00684926

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-N367:  MIMAT0004478          TJP2:  NM_201629     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-N367	TJP2
miRBase Accession/Entrez ID	MIMAT0004478	9414
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C9DUPq21.11//DFNA51//DUP9q21.11//PFIC4//X104//ZO2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TJP2	chr9:71814285(+) A-I      intronic chr9:71824174(+) A-I      intronic chr9:71824415(+) A-I      intronic chr9:71824509(+) A-I      intronic chr9:71858941(+) A-I      intronic chr9:71826070(+) A-I      intronic chr9:71826159(+) A-I      intronic chr9:71829082(+) A-I      intronic chr9:71739216(+) A-I      intronic chr9:71739220(+) A-I      intronic chr9:71744589(+) A-I      intronic chr9:71744723(+) A-I      intronic chr9:71824510(+) A-I      intronic chr9:71859062(+) A-I      intronic chr9:71859015(+) A-I      intronic chr9:71858996(+) A-I      intronic chr9:71833985(+) A-I      intronic chr9:71784476(+) A-I      intronic chr9:71814176(+) A-I      intronic chr9:71807109(+) A-I      intronic chr9:71834025(+) A-I      intronic chr9:71834574(+) A-I      intronic chr9:71776910(+) A-I      intronic chr9:71829154(+) A-I      intronic chr9:71776901(+) A-I      intronic chr9:71834043(+) A-I      intronic chr9:71834575(+) A-I      intronic chr9:71771159(+) A-I      intronic chr9:71776193(+) A-I      intronic chr9:71784354(+) A-I      intronic chr9:71784369(+) A-I      intronic chr9:71815437(+) A-I      intronic chr9:71829168(+) A-I      intronic chr9:71829536(+) A-I      intronic chr9:71829668(+) A-I      intronic chr9:71832423(+) A-I      intronic chr9:71832499(+) A-I      intronic chr9:71833963(+) A-I      intronic chr9:71834881(+) A-I      intronic chr9:71858001(+) A-I      intronic chr9:71834947(+) A-I      intronic chr9:71837912(+) A-I      intronic chr9:71837918(+) A-I      intronic chr9:71837930(+) A-I      intronic chr9:71838279(+) A-I      intronic chr9:71838353(+) A-I      intronic chr9:71858989(+) A-I      intronic chr9:71846223(+) A-I      intronic chr9:71848425(+) A-I      intronic chr9:71776892(+) A-I      intronic chr9:71773607(+) A-I      intronic chr9:71773571(+) A-I      intronic chr9:71771212(+) A-I      intronic chr9:71800873(+) A-I      intronic chr9:71771192(+) A-I      intronic chr9:71848512(+) A-I      intronic chr9:71848600(+) A-I      intronic chr9:71769976(+) A-I      intronic chr9:71769973(+) A-I      intronic chr9:71834920(+) A-I      intronic chr9:71764859(+) A-I      intronic chr9:71764856(+) A-I      intronic chr9:71744891(+) A-I      intronic chr9:71744886(+) A-I      intronic chr9:71744881(+) A-I      intronic chr9:71744880(+) A-I      intronic chr9:71744872(+) A-I      intronic chr9:71744841(+) A-I      intronic chr9:71744747(+) A-I      intronic chr9:71744746(+) A-I      intronic chr9:71848634(+) A-I      intronic chr9:71848642(+) A-I      intronic chr9:71834549(+) A-I      intronic chr9:71858904(+) A-I      intronic chr9:71857989(+) A-I      intronic chr9:71857932(+) A-I      intronic chr9:71857824(+) A-I      intronic chr9:71814283(+) A-I      intronic chr9:71814284(+) A-I      intronic chr9:71855528(+) A-I      intronic chr9:71783319(+) A-I      intronic chr9:71769972(+) A-I      intronic chr9:71744810(+) A-I      intronic chr9:71814332(+) A-I      intronic chr9:71770027(+) A-I      intronic chr9:71834052(+) A-I      intronic chr9:71858880(+) A-I      intronic chr9:71814259(+) A-I      intronic chr9:71858014(+) A-I      intronic chr9:71829022(+) A-I      intronic chr9:71857990(+) A-I      intronic chr9:71859057(+) A-I      intronic chr9:71836658(+) A-I      intronic chr9:71776342(+) A-I      intronic chr9:71839408(+) A-I      intronic chr9:71829709(+) A-I      intronic chr9:71814336(+) A-I      intronic chr9:71765049(+) A-I      intronic chr9:71837729(+) A-I      intronic chr9:71858042(+) A-I      intronic chr9:71744851(+) A-I      intronic chr9:71857879(+) A-I      intronic chr9:71837865(+) A-I      intronic chr9:71774643(+) A-I      intronic chr9:71744240(+) A-I      intronic chr9:71744241(+) A-I      intronic chr9:71763500(+) A-I      intronic chr9:71858041(+) A-I      intronic chr9:71858056(+) A-I      intronic chr9:71773573(+) A-I      intronic chr9:71857828(+) A-I      intronic chr9:71834978(+) A-I      intronic chr9:71867173(+) A-I      intronic chr9:71848605(+) A-I      intronic chr9:71748080(+) A-I      intronic chr9:71765393(+) A-I      intronic chr9:71830794(+) A-I      intronic chr9:71857919(+) A-I      intronic chr9:71829513(+) A-I      intronic chr9:71824188(+) A-I      intronic chr9:71859020(+) A-I      intronic chr9:71846106(+) A-I      intronic chr9:71857946(+) A-I      intronic chr9:71857897(+) A-I      intronic chr9:71834946(+) A-I      intronic chr9:71753492(+) A-I      intronic chr9:71829642(+) A-I      intronic chr9:71762970(+) A-I      intronic chr9:71765310(+) A-I      intronic chr9:71826133(+) A-I      intronic chr9:71826001(+) A-I      intronic chr9:71767902(+) A-I      intronic chr9:71743568(+) A-I      intronic chr9:71773194(+) A-I      intronic chr9:71776325(+) A-I      intronic chr9:71829023(+) A-I      intronic chr9:71744838(+) A-I      intronic chr9:71855493(+) A-I      intronic chr9:71744320(+) A-I      intronic chr9:71771201(+) A-I      intronic chr9:71763521(+) A-I      intronic chr9:71858060(+) A-I      intronic chr9:71744597(+) A-I      intronic chr9:71744228(+) A-I      intronic chr9:71829276(+) A-I      intronic chr9:71858885(+) A-I      intronic chr9:71763417(+) A-I      intronic chr9:71858949(+) A-I      intronic chr9:71858018(+) A-I      intronic chr9:71848571(+) A-I      intronic chr9:71834986(+) A-I      intronic chr9:71848581(+) A-I      intronic chr9:71812147(+) A-I      intronic chr9:71772562(+) A-I      intronic chr9:71829516(+) A-I      intronic chr9:71857880(+) A-I      intronic chr9:71837248(+) A-I      intronic chr9:71858054(+) A-I      intronic chr9:71858901(+) A-I      intronic chr9:71751201(+) A-I      intronic chr9:71825896(+) A-I      intronic chr9:71774617(+) A-I      intronic chr9:71768284(+) A-I      intronic chr9:71762980(+) A-I      intronic chr9:71748061(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TJP2	chr9:71846143(+) A-I intron -    21960545 chr9:71807081(+) A-G intron -    22484847 chr9:71807082(+) A-G intron -    22484847 chr9:71829516(+) A-G intron -    22484847 chr9:71829709(+) A-G intron -    22484847 chr9:71829710(+) A-G intron -    22484847 chr9:71857880(+) A-G intron -    22484847 chr9:71857990(+) A-G intron -    22484847 chr9:71858014(+) A-G intron -    22484847 chr9:71858015(+) A-G intron -    22484847 chr9:71858018(+) A-G intron -    22484847 chr9:71858054(+) A-G intron -    22484847 chr9:71858880(+) A-G intron -    22484847 chr9:71858885(+) A-G intron -    22484847 chr9:71858979(+) A-G intron -    22484847 chr9:71859019(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TJP2	chr9:71736531-71736532(+) m6A exon//intron       24981863 chr9:71789275-71789276(+) m6A 5'UTR//intron       24284625//25456834 chr9:71789304-71789305(+) m6A CDS//intron       24284625//25456834 chr9:71835944-71835945(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr9:71835977-71835978(+) m6A CDS       24284625//24209618//25456834//24981863//27773536//22608085 chr9:71836028-71836029(+) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr9:71836040-71836041(+) m6A CDS       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr9:71836076-71836077(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr9:71836082-71836083(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr9:71836100-71836101(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr9:71836136-71836137(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr9:71836160-71836161(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr9:71836166-71836167(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr9:71836202-71836203(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr9:71836238-71836239(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr9:71836302-71836303(+) m6A CDS       24284625//25456834//24981863 chr9:71840309-71840310(+) m6A CDS       27773535 chr9:71840946-71840947(+) m6A CDS       27773535 chr9:71840959-71840960(+) m6A CDS       27773535 chr9:71841008-71841009(+) m6A CDS       27773535 chr9:71841031-71841032(+) m6A CDS       24981863//27773535 chr9:71841042-71841043(+) m6A CDS       24981863//27773535 chr9:71842701-71842702(+) m6A CDS       24981863//27773535 chr9:71842907-71842908(+) m6A CDS       24284625//27773535 chr9:71842993-71842994(+) m6A CDS       24284625//27773535 chr9:71843004-71843005(+) m6A CDS       24284625//27773535 chr9:71843021-71843022(+) m6A CDS       24284625 chr9:71844125-71844126(+) m6A CDS       24284625 chr9:71845032-71845033(+) m6A CDS       24284625//27773535 chr9:71845100-71845101(+) m6A CDS       24284625 chr9:71845134-71845135(+) m6A CDS       24284625//24981863//27773535 chr9:71849358-71849359(+) m6A CDS       24284625//24981863//27773535 chr9:71850952-71850953(+) m6A CDS       - chr9:71851066-71851067(+) m6A CDS       24284625 chr9:71851870-71851871(+) m6A CDS       24284625//27773535 chr9:71851902-71851903(+) m6A CDS       24284625 chr9:71851914-71851915(+) m6A CDS       24284625 chr9:71851965-71851966(+) m6A CDS       24284625 chr9:71851986-71851987(+) m6A CDS       24284625 chr9:71854943-71854944(+) m6A CDS       27773535 chr9:71854950-71854951(+) m6A CDS       27773535 chr9:71854963-71854964(+) m6A CDS       27773535 chr9:71854971-71854972(+) m6A CDS       27773535 chr9:71861703-71861704(+) Am CDS//exon       - chr9:71863030-71863031(+) m6A CDS       24284625 chr9:71863167-71863168(+) m6A CDS//intron       24284625 chr9:71863203-71863204(+) m6A CDS//intron       24284625 chr9:71864360-71864361(+) m6A CDS//intron       24284625//24981863//27773535 chr9:71865956-71865957(+) m6A CDS//intron       24284625//24981863//27773535 chr9:71865963-71865964(+) m6A CDS//intron       24284625//27773535 chr9:71866011-71866012(+) m6A CDS//intron       24284625 chr9:71867791-71867792(+) m6A CDS       24284625//24981863//27773535 chr9:71869130-71869131(+) m6A CDS       24284625//24209618//24981863//27773535 chr9:71869160-71869161(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr9:71869232-71869233(+) m6A CDS       24284625//24209618//24981863//22608085 chr9:71869276-71869277(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr9:71869304-71869305(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr9:71869334-71869335(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr9:71869404-71869405(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr9:71869431-71869432(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr9:71869440-71869441(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:71869460-71869461(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:71869481-71869482(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:71869526-71869527(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:71869561-71869562(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr9:71869648-71869649(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr9:71869705-71869706(+) m6A 3'UTR       24981863//27773535//22608085 chr9:71869806-71869807(+) m6A 3'UTR       24981863//27773535 chr9:71869812-71869813(+) m6A 3'UTR       24981863//27773535 chr9:71869915-71869916(+) m6A 3'UTR       27773535 chr9:71870010-71870011(+) m6A 3'UTR       27773535 chr9:71870046-71870047(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TJP2	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hiv1-miR-N367	Topotecan       60700

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-N367
Interactor2: TJP2

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg