Basic Information:

  VIRBase ID:  

VHID00684569

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-N367:  MIMAT0004478          CAPN15:  NM_005632     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-N367	CAPN15
miRBase Accession/Entrez ID	MIMAT0004478	6650
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SOLH

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CAPN15	chr16:592674(+) A-I      intronic chr16:593016(+) A-I      intronic chr16:592924(+) A-I      intronic chr16:592799(+) A-I      intronic chr16:586648(+) A-I      intronic chr16:586615(+) A-I      intronic chr16:586612(+) A-I      intronic chr16:583142(+) A-I      intronic chr16:582487(+) A-I      intronic chr16:582133(+) A-I      intronic chr16:582079(+) A-I      intronic chr16:581324(+) A-I      intronic chr16:581299(+) A-I      intronic chr16:581285(+) A-I      intronic chr16:581268(+) A-I      intronic chr16:581262(+) A-I      intronic chr16:593051(+) A-I      intronic chr16:582557(+) A-I      intronic chr16:592667(+) A-I      intronic chr16:581337(+) A-I      intronic chr16:592657(+) A-I      intronic chr16:582119(+) A-I      intronic chr16:582395(+) A-I      intronic chr16:586640(+) A-I      intronic chr16:592688(+) A-I      intronic chr16:592611(+) A-I      intronic chr16:586698(+) A-I      intronic chr16:592662(+) A-I      intronic chr16:592655(+) A-I      intronic chr16:582056(+) A-I      intronic chr16:592729(+) A-I      intronic chr16:592627(+) A-I      intronic chr16:586606(+) A-I      intronic chr16:586609(+) A-I      intronic chr16:581224(+) A-I      intronic chr16:593001(+) A-I      intronic chr16:582434(+) A-I      intronic chr16:582120(+) A-I      intronic chr16:592904(+) A-I      intronic chr16:581326(+) A-I      intronic chr16:586503(+) A-I      intronic chr16:581298(+) A-I      intronic chr16:593118(+) A-I      intronic chr16:592930(+) A-I      intronic chr16:582160(+) A-I      intronic chr16:592931(+) A-I      intronic chr16:592641(+) A-I      intronic chr16:592692(+) A-I      intronic chr16:592962(+) A-I      intronic chr16:592705(+) A-I      intronic chr16:582215(+) A-I      intronic chr16:582161(+) A-I      intronic chr16:592607(+) A-I      intronic chr16:593095(+) A-I      intronic chr16:586478(+) A-I      intronic chr16:581278(+) A-I      intronic chr16:581284(+) A-I      intronic chr16:581263(+) A-I      intronic chr16:581985(+) A-I      intronic chr16:582055(+) A-I      intronic chr16:592821(+) A-I      intronic chr16:592798(+) A-I      intronic chr16:582435(+) A-I      intronic chr16:592605(+) A-I      intronic chr16:581316(+) A-I      intronic chr16:581738(+) A-I      intronic chr16:592643(+) A-I      intronic chr16:582007(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CAPN15	chr16:586047-586048(+) m6A 5'UTR//exon//intron       24284625//24209618 chr16:586054-586055(+) m6A 5'UTR//exon//intron       24284625 chr16:588270-588271(+) m6A exon//intron       24981863 chr16:588359-588360(+) m6A exon//intron       24981863//22608085 chr16:588529-588530(+) m6A exon//intron       24284625//24209618//25456834//24981863//22608085 chr16:588580-588581(+) m6A exon//intron       24284625//24209618//24981863//22608085 chr16:588689-588690(+) m6A exon//intron       24209618 chr16:588863-588864(+) m6A exon//intron       24981863 chr16:589084-589085(+) m6A exon//intron       24209618 chr16:589119-589120(+) m6A exon//intron       24209618//24981863 chr16:589218-589219(+) m6A exon//intron       24981863//22608085 chr16:589266-589267(+) m6A exon//intron       25456834//24981863//22608085 chr16:589348-589349(+) m6A exon//intron       25456834//24981863//22608085 chr16:596884-596885(+) m6A CDS//intron       24284625 chr16:597165-597166(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr16:597211-597212(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr16:597506-597507(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr16:597559-597560(+) m6A 5'UTR//CDS       24284625//25456834//24981863//22608085 chr16:597817-597818(+) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:597895-597896(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:597938-597939(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:598230-598231(+) m6A CDS       24284625//22575960 chr16:598264-598265(+) m6A CDS       24284625//22575960 chr16:599125-599126(+) m6A CDS       24284625//22575960 chr16:599170-599171(+) m6A CDS       24284625 chr16:599194-599195(+) m6A CDS       24284625 chr16:599325-599326(+) m6A CDS       24284625 chr16:599408-599409(+) m6A CDS       24284625 chr16:602317-602318(+) m6A CDS//exon       24284625 chr16:602332-602333(+) m6A CDS//exon       24284625 chr16:602929-602930(+) m6A CDS//exon       24284625//22575960 chr16:603441-603442(+) m6A CDS//exon//intron       24284625//24981863//22575960 chr16:603456-603457(+) m6A CDS//exon//intron       24284625//24981863//22575960 chr16:603551-603552(+) m6A 3'UTR//exon//intron       24284625//24209618//24981863//22575960 chr16:603584-603585(+) m6A 3'UTR//exon//intron       24284625//24209618//24981863//22575960 chr16:603619-603620(+) m6A 3'UTR//exon//intron       24284625//24209618//24981863//22575960//22608085 chr16:603693-603694(+) m6A 3'UTR//exon//intron       24284625//24209618//24981863 chr16:603745-603746(+) m6A 3'UTR//exon//intron       24284625 chr16:603761-603762(+) m6A 3'UTR//exon//intron       24284625 chr16:603876-603877(+) m6A 3'UTR//exon//intron       24284625//25456834 chr16:603902-603903(+) m6A 3'UTR//exon//intron       24284625//25456834 chr16:603922-603923(+) m6A 3'UTR//exon//intron       24284625//25456834 chr16:604050-604051(+) m1A 3'UTR//exon//intron       26863410 chr16:604200-604201(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863 chr16:604254-604255(+) m6A 3'UTR//exon//intron       24284625 chr16:604446-604447(+) m6A 3'UTR//exon//intron       24284625//24981863 chr16:604533-604534(+) m6A 3'UTR//exon//intron       24284625//24981863//27773535 chr16:604609-604610(+) m6A 3'UTR//exon       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CAPN15	Chromatin K562 cells     - Cytosol HeLa-S3 cells|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hiv1-miR-N367	Topotecan       60700

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-N367
Interactor2: CAPN15

Evidence Support:

Prediction-Evidence	miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg