Detail Information

Basic Information:


  VIRBase ID:  

VHID00683477

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:           TMEM150C:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcpv-miR-P1-3p TMEM150C
miRBase
Accession/Entrez ID		 MIMAT0010151 441027
Organism Merkel cell polyomavirus Homo sapiens
Category miRNA mRNA
Alias - TTN3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TMEM150C
chr4:83413174(-) A-I      intronic
chr4:83413176(-) A-I      intronic
chr4:83413198(-) A-I      intronic
chr4:83413165(-) A-I      intronic
chr4:83479030(-) A-I      intronic
chr4:83479020(-) A-I      intronic
chr4:83479019(-) A-I      intronic
chr4:83479010(-) A-I      intronic
chr4:83478972(-) A-I      intronic
chr4:83429100(-) A-I      intronic
chr4:83408588(-) A-I      intronic
chr4:83409859(-) A-I      intronic
chr4:83419206(-) A-I      intronic
chr4:83419260(-) A-I      intronic
chr4:83419648(-) A-I      intronic
chr4:83419716(-) A-I      intronic
chr4:83428980(-) A-I      intronic
chr4:83428993(-) A-I      intronic
chr4:83428998(-) A-I      intronic
chr4:83413160(-) A-I      intronic
chr4:83429060(-) A-I      intronic
chr4:83429069(-) A-I      intronic
chr4:83429077(-) A-I      intronic
chr4:83429078(-) A-I      intronic
chr4:83442028(-) A-I      intronic
chr4:83449759(-) A-I      intronic
chr4:83449976(-) A-I      intronic
chr4:83460144(-) A-I      intronic
chr4:83480481(-) A-I      intronic
chr4:83419387(-) A-I      intronic
chr4:83413170(-) A-I      intronic
chr4:83413200(-) A-I      intronic
chr4:83429789(-) A-I      intronic
chr4:83409869(-) A-I      intronic
chr4:83410273(-) A-I      intronic
chr4:83412927(-) A-I      intronic
chr4:83429128(-) A-I      intronic
chr4:83479117(-) A-I      intronic
chr4:83460695(-) A-I      intronic
chr4:83419510(-) A-I      intronic
chr4:83479156(-) A-I      intronic
chr4:83432895(-) A-I      intronic
chr4:83419230(-) A-I      intronic
chr4:83407872(-) A-I      intronic
chr4:83440762(-) A-I      intronic
chr4:83425626(-) A-I      intronic
chr4:83419685(-) A-I      intronic
chr4:83460041(-) A-I      intronic
chr4:83419623(-) A-I      intronic
chr4:83413463(-) A-I      intronic
chr4:83408519(-) A-I      intronic
chr4:83419624(-) A-I      intronic
chr4:83410005(-) A-I      intronic
chr4:83407781(-) A-I      intronic
chr4:83461464(-) A-I      intronic
chr4:83480453(-) A-I      intronic
chr4:83419283(-) A-I      intronic
chr4:83425539(-) A-I      intronic
chr4:83407794(-) A-I      intronic
chr4:83419735(-) A-I      intronic
chr4:83425560(-) A-I      intronic
chr4:83413419(-) A-I      intronic
chr4:83419567(-) A-I      intronic
chr4:83419638(-) A-I      intronic
chr4:83420683(-) A-I      intronic
chr4:83408539(-) A-I      intronic
chr4:83420728(-) A-I      intronic
chr4:83429104(-) A-I      intronic
chr4:83413553(-) A-I      intronic
chr4:83420712(-) A-I      intronic
chr4:83420727(-) A-I      intronic
chr4:83461444(-) A-I      intronic
chr4:83429812(-) A-I      intronic
chr4:83451647(-) A-I      intronic
chr4:83431426(-) A-I      intronic
chr4:83432886(-) A-I      intronic
chr4:83409898(-) A-I      intronic
chr4:83461527(-) A-I      intronic
chr4:83419347(-) A-I      intronic
chr4:83410120(-) A-I      intronic
chr4:83461428(-) A-I      intronic
chr4:83461377(-) A-I      intronic
chr4:83444963(-) A-I      intronic
chr4:83419338(-) A-I      intronic
chr4:83413446(-) A-I      intronic
chr4:83409930(-) A-I      intronic
chr4:83408601(-) A-I      intronic
chr4:83420718(-) A-I      intronic
chr4:83413459(-) A-I      intronic
chr4:83461356(-) A-I      intronic
chr4:83477308(-) A-I      intronic
chr4:83425429(-) A-I      intronic
chr4:83479157(-) A-I      intronic
chr4:83408397(-) A-I      intronic
chr4:83460825(-) A-I      intronic
chr4:83412879(-) A-I      intronic
chr4:83413177(-) A-I      intronic
chr4:83477403(-) A-I      intronic
chr4:83457334(-) A-I      intronic
chr4:83413181(-) A-I      intronic
chr4:83441791(-) A-I      intronic
chr4:83425994(-) A-I      intronic
chr4:83419296(-) A-I      intronic
chr4:83441924(-) A-I      intronic
chr4:83420649(-) A-I      intronic
chr4:83441921(-) A-I      intronic
chr4:83413455(-) A-I      intronic
chr4:83410128(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TMEM150C
chr4:83408470(-) A-I intron -    21960545
chr4:83408480(-) A-I intron -    21960545
chr4:83424882(-) T-C intron -    22484847
chr4:83467813(-) G-A intron -    22484847
chr4:83467830(-) T-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TMEM150C
chr4:83404391-83404392(-) m6A 3'UTR       27773535
chr4:83404455-83404456(-) m6A 3'UTR       27773535
chr4:83404495-83404496(-) m6A 3'UTR       27773535
chr4:83404501-83404502(-) m6A 3'UTR       27773535
chr4:83404623-83404624(-) m6A 3'UTR       27773535
chr4:83404634-83404635(-) m6A 3'UTR       27773535
chr4:83404710-83404711(-) m6A 3'UTR       24981863//27773535
chr4:83404757-83404758(-) m6A 3'UTR       27773535
chr4:83405673-83405674(-) m6A 3'UTR       27773535
chr4:83405956-83405957(-) m6A 3'UTR       25456834//24981863//22608085
chr4:83406028-83406029(-) m6A 3'UTR       25456834//24981863//27371828//22575960//22608085
chr4:83406061-83406062(-) m6A 3'UTR       25456834//24981863//27371828//22575960//22608085
chr4:83406074-83406075(-) m6A 3'UTR       25456834//24981863//27371828//22575960//22608085
chr4:83406136-83406137(-) m6A 3'UTR       25456834//24981863//27371828//22608085
chr4:83406579-83406580(-) m6A 3'UTR       25456834//24981863
chr4:83406591-83406592(-) m6A 3'UTR       25456834//24981863
chr4:83406604-83406605(-) m6A 3'UTR       25456834//24981863
chr4:83406662-83406663(-) m6A 3'UTR       25456834//24981863
chr4:83406677-83406678(-) m6A CDS       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TMEM150C
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: mcpv-miR-P1-3p
Interactor2: TMEM150C

Evidence Support:


Prediction-Evidence miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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