Detail Information

Basic Information:


  VIRBase ID:  

VHID00683425

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:           FAM102A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcpv-miR-P1-3p FAM102A
miRBase
Accession/Entrez ID		 MIMAT0010151 399665
Organism Merkel cell polyomavirus Homo sapiens
Category miRNA mRNA
Alias - bA203J24.7//C9orf132//EEIG1//SYM-3A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FAM102A
chr9:130741007(-) A-I      intronic
chr9:130715130(-) A-I      intronic
chr9:130715098(-) A-I      intronic
chr9:130741102(-) A-I      intronic
chr9:130713913(-) A-I      intronic
chr9:130715362(-) A-I      intronic
chr9:130715241(-) A-I      intronic
chr9:130719096(-) A-I      intronic
chr9:130715102(-) A-I      intronic
chr9:130715156(-) A-I      intronic
chr9:130715236(-) A-I      intronic
chr9:130718834(-) A-I      intronic
chr9:130713936(-) A-I      intronic
chr9:130741016(-) A-I      intronic
chr9:130713927(-) A-I      intronic
chr9:130715049(-) A-I      intronic
chr9:130740999(-) A-I      intronic
chr9:130740953(-) A-I      intronic
chr9:130740927(-) A-I      intronic
chr9:130732693(-) A-I      intronic
chr9:130732598(-) A-I      intronic
chr9:130730329(-) A-I      intronic
chr9:130728640(-) A-I      intronic
chr9:130720868(-) A-I      intronic
chr9:130720822(-) A-I      intronic
chr9:130720164(-) A-I      intronic
chr9:130719446(-) A-I      intronic
chr9:130719413(-) A-I      intronic
chr9:130719265(-) A-I      intronic
chr9:130718801(-) A-I      intronic
chr9:130718775(-) A-I      intronic
chr9:130718787(-) A-I      intronic
chr9:130719091(-) A-I      intronic
chr9:130720739(-) A-I      intronic
chr9:130718828(-) A-I      intronic
chr9:130720881(-) A-I      intronic
chr9:130719158(-) A-I      intronic
chr9:130732495(-) A-I      intronic
chr9:130720135(-) A-I      intronic
chr9:130718865(-) A-I      intronic
chr9:130715153(-) A-I      intronic
chr9:130718757(-) A-I      intronic
chr9:130715250(-) A-I      intronic
chr9:130719027(-) A-I      intronic
chr9:130740849(-) A-I      intronic
chr9:130720897(-) A-I      intronic
chr9:130719423(-) A-I      intronic
chr9:130715192(-) A-I      intronic
chr9:130732478(-) A-I      intronic
chr9:130715347(-) A-I      intronic
chr9:130718866(-) A-I      intronic
chr9:130719188(-) A-I      intronic
chr9:130715268(-) A-I      intronic
chr9:130715068(-) A-I      intronic
chr9:130720129(-) A-I      intronic
chr9:130719501(-) A-I      intronic
chr9:130715166(-) A-I      intronic
chr9:130720184(-) A-I      intronic
chr9:130720778(-) A-I      intronic
chr9:130719408(-) A-I      intronic
chr9:130720943(-) A-I      intronic
chr9:130715405(-) A-I      intronic
chr9:130718849(-) A-I      intronic
chr9:130719502(-) A-I      intronic
chr9:130725051(-) A-I      intronic
chr9:130711436(-) A-I      intronic
chr9:130719131(-) A-I      intronic
chr9:130732560(-) A-I      intronic
chr9:130715121(-) A-I      intronic
chr9:130719369(-) A-I      intronic
chr9:130715333(-) A-I      intronic
chr9:130715365(-) A-I      intronic
chr9:130718752(-) A-I      intronic
chr9:130728669(-) A-I      intronic
chr9:130720251(-) A-I      intronic
chr9:130715190(-) A-I      intronic
chr9:130720288(-) A-I      intronic
chr9:130719494(-) A-I      intronic
chr9:130719226(-) A-I      intronic
chr9:130719425(-) A-I      intronic
chr9:130709534(-) A-I      intronic
chr9:130715403(-) A-I      intronic
chr9:130727124(-) A-I      intronic
chr9:130711427(-) A-I      intronic
chr9:130719118(-) A-I      intronic
chr9:130713948(-) A-I      intronic
chr9:130711471(-) A-I      intronic
chr9:130732534(-) A-I      intronic
chr9:130715131(-) A-I      intronic
chr9:130720836(-) A-I      intronic
chr9:130732533(-) A-I      intronic
chr9:130720209(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED FAM102A
chr9:130715027(-) A-G intron -    22484847
chr9:130715070(-) A-G intron -    22484847
chr9:130720184(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FAM102A
chr9:130703412-130703413(-) m6A 3'UTR//exon       24284625//25456834//24981863//26404942
chr9:130703451-130703452(-) m6A 3'UTR//exon       24284625//25456834//24981863//26404942
chr9:130703501-130703502(-) m6A 3'UTR//exon       24284625//25456834//24981863
chr9:130703514-130703515(-) m6A 3'UTR//exon       25456834//24981863
chr9:130703521-130703522(-) m6A 3'UTR//exon       25456834//24981863
chr9:130703531-130703532(-) m6A 3'UTR//exon       25456834//24981863
chr9:130703558-130703559(-) m6A 3'UTR//exon       25456834
chr9:130704717-130704718(-) m6A 3'UTR//exon       24284625
chr9:130704838-130704839(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr9:130704862-130704863(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr9:130704900-130704901(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr9:130704977-130704978(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr9:130705128-130705129(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22575960
chr9:130705152-130705153(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960
chr9:130705168-130705169(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085
chr9:130705238-130705239(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085
chr9:130705289-130705290(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:130705399-130705400(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr9:130705420-130705421(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr9:130705542-130705543(-) m6A exon//intron       24284625
chr9:130707100-130707101(-) Am CDS//exon       -
chr9:130707801-130707802(-) m6A CDS//exon       24284625
chr9:130708007-130708008(-) m6A CDS//exon       24284625
chr9:130742376-130742377(-) m6A CDS//exon       24284625//25456834//24981863//27371828
chr9:130742423-130742424(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27371828
chr9:130742432-130742433(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27371828
chr9:130742557-130742558(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr9:130742571-130742572(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr9:130742588-130742589(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr9:130742593-130742594(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr9:130742641-130742642(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr9:130742769-130742770(-) m6A 5'UTR       24209618//24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate FAM102A
Chromatin K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: mcpv-miR-P1-3p
Interactor2: FAM102A

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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