Basic Information:

  VIRBase ID:  

VHID00683262

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:  MIMAT0010151          SH3PXD2B:  NM_001017995     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-3p	SH3PXD2B
miRBase Accession/Entrez ID	MIMAT0010151	285590
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	FAD49//FTHS//HOFI//KIAA1295//TKS4//TSK4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SH3PXD2B	chr5:171816989(-) A-I      intronic chr5:171843514(-) A-I      intronic chr5:171843602(-) A-I      intronic chr5:171843846(-) A-I      intronic chr5:171859834(-) A-I      intronic chr5:171859833(-) A-I      intronic chr5:171843877(-) A-I      intronic chr5:171816276(-) A-I      intronic chr5:171816150(-) A-I      intronic chr5:171816149(-) A-I      intronic chr5:171843263(-) A-I      intronic chr5:171859794(-) A-I      intronic chr5:171810033(-) A-I      intronic chr5:171809884(-) A-I      intronic chr5:171809879(-) A-I      intronic chr5:171809871(-) A-I      intronic chr5:171809825(-) A-I      intronic chr5:171809312(-) A-I      intronic chr5:171809263(-) A-I      intronic chr5:171807284(-) A-I      intronic chr5:171807283(-) A-I      intronic chr5:171807268(-) A-I      intronic chr5:171843901(-) A-I      intronic chr5:171843908(-) A-I      intronic chr5:171843913(-) A-I      intronic chr5:171843992(-) A-I      intronic chr5:171859171(-) A-I      intronic chr5:171859192(-) A-I      intronic chr5:171843985(-) A-I      intronic chr5:171843931(-) A-I      intronic chr5:171843911(-) A-I      intronic chr5:171807218(-) A-I      intronic chr5:171807200(-) A-I      intronic chr5:171807190(-) A-I      intronic chr5:171843909(-) A-I      intronic chr5:171843914(-) A-I      intronic chr5:171843895(-) A-I      intronic chr5:171807186(-) A-I      intronic chr5:171807167(-) A-I      intronic chr5:171843892(-) A-I      intronic chr5:171843889(-) A-I      intronic chr5:171803284(-) A-I      intronic chr5:171803145(-) A-I      intronic chr5:171803140(-) A-I      intronic chr5:171803139(-) A-I      intronic chr5:171807247(-) A-I      intronic chr5:171843884(-) A-I      intronic chr5:171809316(-) A-I      intronic chr5:171843880(-) A-I      intronic chr5:171843841(-) A-I      intronic chr5:171770697(-) A-I      intronic chr5:171770687(-) A-I      intronic chr5:171768934(-) A-I      intronic chr5:171768928(-) A-I      intronic chr5:171767845(-) A-I      intronic chr5:171759540(-) A-I      intronic chr5:171759514(-) A-I      intronic chr5:171759494(-) A-I      intronic chr5:171759318(-) A-I      intronic chr5:171759315(-) A-I      intronic chr5:171759312(-) A-I      intronic chr5:171758033(-) A-I      intronic chr5:171758027(-) A-I      intronic chr5:171758019(-) A-I      intronic chr5:171843106(-) A-I      intronic chr5:171843102(-) A-I      intronic chr5:171807194(-) A-I      intronic chr5:171807170(-) A-I      intronic chr5:171794108(-) A-I      intronic chr5:171794038(-) A-I      intronic chr5:171801574(-) A-I      intronic chr5:171802198(-) A-I      intronic chr5:171796660(-) A-I      intronic chr5:171796642(-) A-I      intronic chr5:171794496(-) A-I      intronic chr5:171794478(-) A-I      intronic chr5:171794477(-) A-I      intronic chr5:171794118(-) A-I      intronic chr5:171794114(-) A-I      intronic chr5:171794073(-) A-I      intronic chr5:171793854(-) A-I      intronic chr5:171793722(-) A-I      intronic chr5:171807230(-) A-I      intronic chr5:171793720(-) A-I      intronic chr5:171784280(-) A-I      intronic chr5:171859856(-) A-I      intronic chr5:171770709(-) A-I      intronic chr5:171843912(-) A-I      intronic chr5:171817500(-) A-I      intronic chr5:171817978(-) A-I      intronic chr5:171816964(-) A-I      intronic chr5:171816635(-) A-I      intronic chr5:171816630(-) A-I      intronic chr5:171817983(-) A-I      intronic chr5:171818670(-) A-I      intronic chr5:171818680(-) A-I      intronic chr5:171819661(-) A-I      intronic chr5:171819665(-) A-I      intronic chr5:171819670(-) A-I      intronic chr5:171819707(-) A-I      intronic chr5:171821044(-) A-I      intronic chr5:171823826(-) A-I      intronic chr5:171823833(-) A-I      intronic chr5:171823845(-) A-I      intronic chr5:171835611(-) A-I      intronic chr5:171835614(-) A-I      intronic chr5:171835639(-) A-I      intronic chr5:171836887(-) A-I      intronic chr5:171836888(-) A-I      intronic chr5:171836957(-) A-I      intronic chr5:171843194(-) A-I      intronic chr5:171843220(-) A-I      intronic chr5:171843250(-) A-I      intronic chr5:171843281(-) A-I      intronic chr5:171843295(-) A-I      intronic chr5:171843307(-) A-I      intronic chr5:171816667(-) A-I      intronic chr5:171758949(-) A-I      intronic chr5:171803172(-) A-I      intronic chr5:171843311(-) A-I      intronic chr5:171807264(-) A-I      intronic chr5:171843176(-) A-I      intronic chr5:171816253(-) A-I      intronic chr5:171843270(-) A-I      intronic chr5:171843249(-) A-I      intronic chr5:171836227(-) A-I      intronic chr5:171844001(-) A-I      intronic chr5:171809818(-) A-I      intronic chr5:171843410(-) A-I      intronic chr5:171836129(-) A-I      intronic chr5:171810919(-) A-I      intronic chr5:171803174(-) A-I      intronic chr5:171809244(-) A-I      intronic chr5:171835823(-) A-I      intronic chr5:171803305(-) A-I      intronic chr5:171768936(-) A-I      intronic chr5:171857985(-) A-I      intronic chr5:171809220(-) A-I      intronic chr5:171862496(-) A-I      intronic chr5:171816973(-) A-I      intronic chr5:171836198(-) A-I      intronic chr5:171796072(-) A-I      intronic chr5:171816689(-) A-I      intronic chr5:171843210(-) A-I      intronic chr5:171803094(-) A-I      intronic chr5:171807154(-) A-I      intronic chr5:171843375(-) A-I      intronic chr5:171807216(-) A-I      intronic chr5:171803229(-) A-I      intronic chr5:171819787(-) A-I      intronic chr5:171803119(-) A-I      intronic chr5:171821180(-) A-I      intronic chr5:171794079(-) A-I      intronic chr5:171759372(-) A-I      intronic chr5:171794046(-) A-I      intronic chr5:171810918(-) A-I      intronic chr5:171819600(-) A-I      intronic chr5:171843405(-) A-I      intronic chr5:171843496(-) A-I      intronic chr5:171823706(-) A-I      intronic chr5:171843501(-) A-I      intronic chr5:171843166(-) A-I      intronic chr5:171802358(-) A-I      intronic chr5:171803328(-) A-I      intronic chr5:171801451(-) A-I      intronic chr5:171817942(-) A-I      intronic chr5:171843088(-) A-I      intronic chr5:171794087(-) A-I      intronic chr5:171794168(-) A-I      intronic chr5:171759519(-) A-I      intronic chr5:171771335(-) A-I      intronic chr5:171818046(-) A-I      intronic chr5:171813807(-) A-I      intronic chr5:171843327(-) A-I      intronic chr5:171794504(-) A-I      intronic chr5:171767629(-) A-I      intronic chr5:171819706(-) A-I      intronic chr5:171816694(-) A-I      intronic chr5:171843370(-) A-I      intronic chr5:171843873(-) A-I      intronic chr5:171843469(-) A-I      intronic chr5:171818613(-) A-I      intronic chr5:171862533(-) A-I      intronic chr5:171793856(-) A-I      intronic chr5:171796650(-) A-I      intronic chr5:171807324(-) A-I      intronic chr5:171803110(-) A-I      intronic chr5:171803171(-) A-I      intronic chr5:171816727(-) A-I      intronic chr5:171793993(-) A-I      intronic chr5:171810976(-) A-I      intronic chr5:171843184(-) A-I      intronic chr5:171803236(-) A-I      intronic chr5:171796517(-) A-I      intronic chr5:171819689(-) A-I      intronic chr5:171759467(-) A-I      intronic chr5:171809198(-) A-I      intronic chr5:171796544(-) A-I      intronic chr5:171816647(-) A-I      intronic chr5:171818750(-) A-I      intronic chr5:171786266(-) A-I      intronic chr5:171794026(-) A-I      intronic chr5:171843075(-) A-I      intronic chr5:171816654(-) A-I      intronic chr5:171767715(-) A-I      intronic chr5:171843183(-) A-I      intronic chr5:171803306(-) A-I      intronic chr5:171756352(-) A-I      intronic chr5:171816722(-) A-I      intronic chr5:171803166(-) A-I      intronic chr5:171843456(-) A-I      intronic chr5:171843319(-) A-I      intronic chr5:171803252(-) A-I      intronic chr5:171796580(-) A-I      intronic chr5:171794451(-) A-I      intronic chr5:171810936(-) A-I      intronic chr5:171794129(-) A-I      intronic chr5:171817934(-) A-I      intronic chr5:171803274(-) A-I      intronic chr5:171794105(-) A-I      intronic chr5:171757981(-) A-I      intronic chr5:171805818(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SH3PXD2B	chr5:171803094(-) A-I intron -    15342557 chr5:171803096(-) A-I intron -    15342557 chr5:171803101(-) A-I intron -    15342557 chr5:171803110(-) A-I intron -    15342557 chr5:171803119(-) A-I intron -    15342557 chr5:171803166(-) A-I intron -    15342557 chr5:171803171(-) A-I intron -    15342557 chr5:171803172(-) A-I intron -    15342557 chr5:171803174(-) A-I intron -    15342557 chr5:171803194(-) A-I intron -    15342557 chr5:171803228(-) A-I intron -    15342557 chr5:171803229(-) A-I intron -    15342557 chr5:171803232(-) A-I intron -    15342557 chr5:171803236(-) A-I intron -    15342557 chr5:171803237(-) A-I intron -    15342557 chr5:171803252(-) A-I intron -    15342557 chr5:171803305(-) A-I intron -    15342557 chr5:171803306(-) A-I intron -    15342557 chr5:171803312(-) A-I intron -    15342557 chr5:171803328(-) A-I intron -    15342557 chr5:171804885(-) A-I intron -    15342557 chr5:171805818(-) A-I intron -    15342557 chr5:171810918(-) A-I intron -    21960545 chr5:171810919(-) A-I intron -    21960545 chr5:171796736(-) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SH3PXD2B	chr5:171760770-171760771(-) m6A 3'UTR//CDS//exon//intron       24284625 chr5:171760853-171760854(-) m6A 3'UTR//intron       24284625//27773535 chr5:171761231-171761232(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:171761236-171761237(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:171761262-171761263(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:171761295-171761296(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085 chr5:171761429-171761430(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:171761451-171761452(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:171761471-171761472(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:171761478-171761479(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:171761558-171761559(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:171761571-171761572(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:171761649-171761650(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:171761663-171761664(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:171761669-171761670(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:171761710-171761711(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:171761770-171761771(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:171761789-171761790(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:171761800-171761801(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:171761840-171761841(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr5:171761947-171761948(-) m6A 3'UTR//intron       24284625//24209618//22608085 chr5:171762017-171762018(-) m6A 3'UTR//intron       24284625//24209618 chr5:171762045-171762046(-) m6A 3'UTR//intron       24284625 chr5:171762133-171762134(-) m6A 3'UTR//intron       24284625//24981863 chr5:171762147-171762148(-) m6A 3'UTR//intron       24284625//24981863 chr5:171762178-171762179(-) m6A 3'UTR//intron       24284625//24981863 chr5:171763639-171763640(-) m6A 3'UTR//intron       24284625//24209618 chr5:171763757-171763758(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535 chr5:171763803-171763804(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535 chr5:171763852-171763853(-) m6A 3'UTR//intron       24284625//24981863//27773535 chr5:171763880-171763881(-) m6A 3'UTR//intron       24284625//27773535 chr5:171764170-171764171(-) m6A 3'UTR//intron       24284625 chr5:171764313-171764314(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr5:171764397-171764398(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:171764484-171764485(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535 chr5:171764709-171764710(-) m6A 3'UTR//intron       24209618 chr5:171764872-171764873(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr5:171764991-171764992(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr5:171765019-171765020(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr5:171765042-171765043(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr5:171765051-171765052(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr5:171765061-171765062(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr5:171765067-171765068(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr5:171765105-171765106(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr5:171765154-171765155(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr5:171765212-171765213(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr5:171765268-171765269(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr5:171765463-171765464(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27773536//22608085 chr5:171765488-171765489(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27773536//22608085 chr5:171765511-171765512(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27773536//22608085 chr5:171765517-171765518(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27773536//22608085 chr5:171765553-171765554(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773536//22608085 chr5:171765604-171765605(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr5:171765623-171765624(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr5:171765693-171765694(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773536//22608085 chr5:171765806-171765807(-) m6A CDS//intron       24284625//25456834//27773536 chr5:171765825-171765826(-) m6A CDS//intron       24284625//25456834//27773536 chr5:171765846-171765847(-) m6A CDS//intron       24284625//25456834//27773536 chr5:171765905-171765906(-) m6A CDS//intron       24284625//25456834//27773536 chr5:171765963-171765964(-) m6A CDS//intron       24284625//25456834//27773536 chr5:171765976-171765977(-) m6A CDS//intron       24284625//25456834//27773536 chr5:171766078-171766079(-) m6A CDS//intron       24284625//25456834//27773536 chr5:171766132-171766133(-) m6A CDS//intron       24284625//25456834//27773535//27773536 chr5:171766173-171766174(-) m6A CDS//intron       24284625//25456834//27773535//27773536 chr5:171766191-171766192(-) m6A CDS//intron       24284625//24209618//25456834//27773535//27371828//27773536//22608085 chr5:171766250-171766251(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr5:171766350-171766351(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr5:171766365-171766366(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr5:171766387-171766388(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr5:171766407-171766408(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr5:171766570-171766571(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr5:171766606-171766607(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr5:171766648-171766649(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr5:171766672-171766673(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr5:171766738-171766739(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr5:171766809-171766810(-) m6A CDS//intron       24284625//27773535//22575960 chr5:171766906-171766907(-) m6A CDS//intron       24284625//27773535 chr5:171773186-171773187(-) m6A CDS       24284625//27773535 chr5:171774296-171774297(-) m6A CDS       24284625//27773535//27773536 chr5:171774313-171774314(-) m6A CDS       24284625//27773535//27773536 chr5:171777545-171777546(-) m6A CDS       24981863//27773536 chr5:171780915-171780916(-) m6A CDS       24981863 chr5:171780954-171780955(-) m6A CDS       24284625//24209618//24981863 chr5:171780969-171780970(-) m6A CDS       24284625//24209618//24981863 chr5:171789761-171789762(-) m6A CDS       24284625//24209618 chr5:171789851-171789852(-) m6A CDS       24209618 chr5:171789861-171789862(-) m6A CDS       24209618 chr5:171833312-171833313(-) m6A CDS       24284625 chr5:171833320-171833321(-) m6A CDS       24284625 chr5:171833342-171833343(-) m6A CDS       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SH3PXD2B	Exosome Blood     - Nucleolus K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-3p
Interactor2: SH3PXD2B

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg