Basic Information:

  VIRBase ID:  

VHID00683205

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:  MIMAT0010151          MDGA1:  NM_153487     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-3p	MDGA1
miRBase Accession/Entrez ID	MIMAT0010151	266727
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	GPIM//MAMDC3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MDGA1	chr6:37655259(-) A-I      intronic chr6:37655075(-) A-I      intronic chr6:37655166(-) A-I      intronic chr6:37654374(-) A-I      intronic chr6:37653016(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	MDGA1	chr6:37653016(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MDGA1	chr6:37600558-37600559(-) m6A 3'UTR       - chr6:37600577-37600578(-) m6A 3'UTR       - chr6:37600586-37600587(-) m6A 3'UTR       - chr6:37602600-37602601(-) m6A 3'UTR//exon       - chr6:37604433-37604434(-) m6A 3'UTR//exon       - chr6:37604472-37604473(-) m6A 3'UTR//exon       - chr6:37604510-37604511(-) m6A 3'UTR//exon       25456834 chr6:37604572-37604573(-) m6A 3'UTR//exon       25456834//24981863//27371828 chr6:37604608-37604609(-) m6A 3'UTR//exon       25456834//24981863//27371828 chr6:37604617-37604618(-) m6A 3'UTR//exon       25456834//24981863//27371828 chr6:37604653-37604654(-) m6A 3'UTR//exon       25456834//24981863//27371828//27773536 chr6:37604661-37604662(-) m6A 3'UTR//exon       25456834//24981863//27773536 chr6:37604685-37604686(-) m6A 3'UTR//exon       25456834//24981863//27773536 chr6:37604731-37604732(-) m6A 3'UTR//exon       25456834//24981863 chr6:37604812-37604813(-) m6A 3'UTR//exon       24981863 chr6:37604843-37604844(-) m6A 3'UTR//exon       24981863//22575960 chr6:37604850-37604851(-) m6A 3'UTR//exon       24981863//22575960 chr6:37604956-37604957(-) m6A 3'UTR//exon       25456834//24981863//27371828//22608085 chr6:37604984-37604985(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22608085 chr6:37604990-37604991(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22608085 chr6:37605075-37605076(-) m6A 3'UTR//exon       25456834//24981863//27371828//22608085 chr6:37607231-37607232(-) m6A exon//intron       - chr6:37607256-37607257(-) m6A exon//intron       - chr6:37607327-37607328(-) m6A exon//intron       27371828 chr6:37607374-37607375(-) m6A exon//intron       - chr6:37612328-37612329(-) m6A 3'UTR//CDS       24981863 chr6:37612367-37612368(-) m6A 3'UTR//CDS       24981863 chr6:37612376-37612377(-) m6A CDS       24981863 chr6:37613716-37613717(-) m6A CDS//intron       - chr6:37613816-37613817(-) m6A intron       - chr6:37617783-37617784(-) m6A exon//intron       - chr6:37617861-37617862(-) m6A exon//intron       - chr6:37622679-37622680(-) m6A CDS//exon       - chr6:37622701-37622702(-) m6A CDS//exon       - chr6:37622749-37622750(-) m6A exon//intron       - chr6:37626146-37626147(-) m6A CDS//exon       - chr6:37626160-37626161(-) m6A CDS//exon       - chr6:37626185-37626186(-) m6A CDS//exon       - chr6:37664676-37664677(-) m6A 5'UTR//intron       27773536 chr6:37664759-37664760(-) m6A 5'UTR//intron       27773536 chr6:37665069-37665070(-) m6A 5'UTR//intron       24981863//27371828//27773536 chr6:37665076-37665077(-) m6A 5'UTR//intron       24981863//27371828//27773536 chr6:37665196-37665197(-) m6A 5'UTR//intron       24981863//27773536 chr6:37665222-37665223(-) m6A 5'UTR//intron       24981863 chr6:37665230-37665231(-) m6A 5'UTR//intron       24981863 chr6:37665351-37665352(-) m6A 5'UTR//intron       24981863 chr6:37665357-37665358(-) m6A 5'UTR//intron       24981863 chr6:37665753-37665754(-) m6A 5'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MDGA1	Exosome Blood     - Nucleolus K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-3p
Interactor2: MDGA1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg