Basic Information:

  VIRBase ID:  

VHID00683188

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:  MIMAT0010151          TCP11L2:  NM_152772     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-3p	TCP11L2
miRBase Accession/Entrez ID	MIMAT0010151	255394
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TCP11L2	chr12:106721113(+) A-I      intronic chr12:106732776(+) A-I      intronic chr12:106732781(+) A-I      intronic chr12:106732784(+) A-I      intronic chr12:106713923(+) A-I      intronic chr12:106732741(+) A-I      intronic chr12:106732808(+) A-I      intronic chr12:106732802(+) A-I      intronic chr12:106721101(+) A-I      intronic chr12:106714014(+) A-I      intronic chr12:106714176(+) A-I      intronic chr12:106708894(+) A-I      intronic chr12:106721097(+) A-I      intronic chr12:106721137(+) A-I      intronic chr12:106721181(+) A-I      intronic chr12:106714131(+) A-I      intronic chr12:106714125(+) A-I      intronic chr12:106721098(+) A-I      intronic chr12:106722309(+) A-I      intronic chr12:106714104(+) A-I      intronic chr12:106721238(+) A-I      intronic chr12:106714096(+) A-I      intronic chr12:106712614(+) A-I      intronic chr12:106722215(+) A-I      intronic chr12:106708920(+) A-I      intronic chr12:106722207(+) A-I      intronic chr12:106721232(+) A-I      intronic chr12:106706437(+) A-I      intronic chr12:106707243(+) A-I      intronic chr12:106707239(+) A-I      intronic chr12:106707173(+) A-I      intronic chr12:106721105(+) A-I      intronic chr12:106737639(+) A-I      intronic chr12:106711238(+) A-I      intronic chr12:106713962(+) A-I      intronic chr12:106721111(+) A-I      intronic chr12:106721003(+) A-I      intronic chr12:106738876(+) A-I      intronic chr12:106713932(+) A-I      intronic chr12:106721033(+) A-I      intronic chr12:106721158(+) A-I      intronic chr12:106708857(+) A-I      intronic chr12:106714155(+) A-I      intronic chr12:106721008(+) A-I      intronic chr12:106721041(+) A-I      intronic chr12:106714016(+) A-I      intronic chr12:106720995(+) A-I      intronic chr12:106721144(+) A-I      intronic chr12:106712896(+) A-I      intronic chr12:106722069(+) A-I      intronic chr12:106714170(+) A-I      intronic chr12:106714015(+) A-I      intronic chr12:106713924(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TCP11L2	chr12:106696714-106696715(+) m6A 5'UTR//intron       24981863 chr12:106696913-106696914(+) m6A 5'UTR//intron       25456834//24981863 chr12:106696976-106696977(+) m6A 5'UTR//intron       25456834//24981863 chr12:106696982-106696983(+) m6A 5'UTR//intron       25456834//24981863 chr12:106697028-106697029(+) m6A 5'UTR//intron       25456834 chr12:106697286-106697287(+) m6A 5'UTR//intron       25456834 chr12:106740192-106740193(+) m6A CDS       24284625//24981863//22608085 chr12:106740211-106740212(+) m6A CDS       24284625//24981863//26404942//22608085 chr12:106740223-106740224(+) m6A CDS       24284625//24981863//26404942//22608085 chr12:106740314-106740315(+) m6A 3'UTR       24284625//24981863//26404942//22575960//22608085 chr12:106740460-106740461(+) m6A 3'UTR       24284625//24981863//22608085 chr12:106740477-106740478(+) m6A 3'UTR       24284625//24981863//22608085 chr12:106740494-106740495(+) m6A 3'UTR       24284625//24981863//22608085 chr12:106740505-106740506(+) m6A 3'UTR       24284625//24981863//22608085 chr12:106740536-106740537(+) m6A 3'UTR       24284625//24981863//22608085 chr12:106740553-106740554(+) m6A 3'UTR       24981863 chr12:106740560-106740561(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TCP11L2	Exosome Blood     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-3p
Interactor2: TCP11L2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg