Basic Information:

  VIRBase ID:  

VHID00682649

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:  MIMAT0010151          TMEM123:  NM_052932     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-3p	TMEM123
miRBase Accession/Entrez ID	MIMAT0010151	114908
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	KCT3//PORIMIN//PORMIN

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TMEM123	chr11:102296483(-) A-I      intronic chr11:102296423(-) A-I      intronic chr11:102296412(-) A-I      intronic chr11:102296490(-) A-I      intronic chr11:102296488(-) A-I      intronic chr11:102277381(-) A-I      intronic chr11:102306289(-) A-I      intronic chr11:102296484(-) A-I      intronic chr11:102296485(-) A-I      intronic chr11:102308175(-) A-I      intronic chr11:102306962(-) A-I      intronic chr11:102298335(-) A-I      intronic chr11:102298457(-) A-I      intronic chr11:102299161(-) A-I      intronic chr11:102299171(-) A-I      intronic chr11:102298362(-) A-I      intronic chr11:102299234(-) A-I      intronic chr11:102298388(-) A-I      intronic chr11:102296429(-) A-I      intronic chr11:102298486(-) A-I      intronic chr11:102299170(-) A-I      intronic chr11:102298572(-) A-I      intronic chr11:102299181(-) A-I      intronic chr11:102299317(-) A-I      intronic chr11:102275918(-) A-I      intronic chr11:102308136(-) A-I      intronic chr11:102299085(-) A-I      intronic chr11:102296507(-) A-I      intronic chr11:102299131(-) A-I      intronic chr11:102308908(-) A-I      intronic chr11:102296533(-) A-I      intronic chr11:102299068(-) A-I      intronic chr11:102298313(-) A-I      intronic chr11:102306961(-) A-I      intronic chr11:102296537(-) A-I      intronic chr11:102306048(-) A-I      intronic chr11:102296517(-) A-I      intronic chr11:102306225(-) A-I      intronic chr11:102306022(-) A-I      intronic chr11:102291692(-) A-I      intronic chr11:102296393(-) A-I      intronic chr11:102277453(-) A-I      intronic chr11:102298566(-) A-I      intronic chr11:102305115(-) A-I      intronic chr11:102308870(-) A-I      intronic chr11:102296479(-) A-I      intronic chr11:102307069(-) A-I      intronic chr11:102308137(-) A-I      intronic chr11:102291609(-) A-I      intronic chr11:102308153(-) A-I      intronic chr11:102296532(-) A-I      intronic chr11:102296453(-) A-I      intronic chr11:102306298(-) A-I      intronic chr11:102307058(-) A-I      intronic chr11:102308916(-) A-I      intronic chr11:102307032(-) A-I      intronic chr11:102298447(-) A-I      intronic chr11:102275409(-) A-I      intronic chr11:102298383(-) A-I      intronic chr11:102308961(-) A-I      intronic chr11:102298396(-) A-I      intronic chr11:102296417(-) A-I      intronic chr11:102296463(-) A-I      intronic chr11:102273997(-) A-I      intronic chr11:102308957(-) A-I      intronic chr11:102296591(-) A-I      intronic chr11:102308106(-) A-I      intronic chr11:102298402(-) A-I      intronic chr11:102299311(-) A-I      intronic chr11:102306267(-) A-I      intronic chr11:102305119(-) A-I      intronic chr11:102308183(-) A-I      intronic chr11:102299233(-) A-I      intronic chr11:102305111(-) A-I      intronic chr11:102308818(-) A-I      intronic chr11:102305167(-) A-I      intronic chr11:102305107(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TMEM123	chr11:102304997(-) A-I intron -    21960545 chr11:102306203(-) A-I intron -    21960545 chr11:102306225(-) A-I intron -    21960545 chr11:102306262(-) A-I intron -    21960545 chr11:102306267(-) A-I intron -    21960545 chr11:102306351(-) A-I intron -    21960545 chr11:102306352(-) A-I intron -    21960545 chr11:102305107(-) A-G intron -    22484847 chr11:102305111(-) A-G intron -    22484847 chr11:102305119(-) A-G intron -    22484847 chr11:102305167(-) A-G intron -    22484847 chr11:102306022(-) A-G intron -    22484847 chr11:102306048(-) A-G intron -    22484847 chr11:102306225(-) A-G intron -    22484847 chr11:102306298(-) A-G intron -    22484847 chr11:102296307(-) G-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMEM123	chr11:102267156-102267157(-) Y 3'UTR       26075521 chr11:102267301-102267302(-) m6A 3'UTR       26404942 chr11:102267320-102267321(-) Y 3'UTR       26075521 chr11:102268026-102268027(-) m6A 3'UTR       26404942 chr11:102268059-102268060(-) m6A 3'UTR       26404942 chr11:102268375-102268376(-) m6A 3'UTR       26404942 chr11:102268539-102268540(-) m6A 3'UTR       26404942 chr11:102268581-102268582(-) m6A 3'UTR       26404942 chr11:102268606-102268607(-) m6A 3'UTR       26404942 chr11:102268630-102268631(-) m6A 3'UTR       26404942 chr11:102268654-102268655(-) m6A 3'UTR       26404942 chr11:102268700-102268701(-) m6A 3'UTR       26404942 chr11:102269615-102269616(-) m6A CDS       26404942 chr11:102272273-102272274(-) m6A CDS       26404942 chr11:102272723-102272724(-) m6A CDS//exon       24981863//26404942//27773535 chr11:102272742-102272743(-) m6A CDS//exon       24981863//26404942//27773535 chr11:102272824-102272825(-) m6A CDS//exon       24981863//26404942//27773535 chr11:102272855-102272856(-) m6A 5'UTR//CDS//exon       24981863//26404942//27773535 chr11:102272878-102272879(-) m6A 5'UTR//CDS//exon       24981863//26404942//27773535 chr11:102272898-102272899(-) m6A 5'UTR//CDS//exon       24981863//26404942//27773535 chr11:102272934-102272935(-) m6A 5'UTR//CDS//exon       24981863//26404942//27773535 chr11:102319005-102319006(-) m6A 5'UTR//intron       27773535 chr11:102319051-102319052(-) m6A 5'UTR//intron       27773535 chr11:102323088-102323089(-) m6A 5'UTR//intron       27371828//27773536 chr11:102323348-102323349(-) m6A CDS//intron       24284625//25456834//24981863//28052920//27371828//27773536//22575960 chr11:102323356-102323357(-) m6A 5'UTR//intron       24284625//25456834//24981863//28052920//27371828//27773536//22575960 chr11:102323592-102323593(-) m6A 5'UTR//intron       24981863//27371828//27773536 chr11:102323690-102323691(-) m6A 5'UTR//intron       24981863//27371828//27773536 chr11:102323698-102323699(-) m6A 5'UTR//intron       24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMEM123	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-3p
Interactor2: TMEM123

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg