Basic Information:

  VIRBase ID:  

VHID00682514

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:  MIMAT0010151          THAP3:  NM_001195752     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-3p	THAP3
miRBase Accession/Entrez ID	MIMAT0010151	90326
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	THAP3	chr1:6690894(+) A-I      intronic chr1:6690770(+) A-I      intronic chr1:6690748(+) A-I      intronic chr1:6691021(+) A-I      intronic chr1:6691432(+) A-I      intronic chr1:6691441(+) A-I      intronic chr1:6691016(+) A-I      intronic chr1:6690879(+) A-I      intronic chr1:6686812(+) A-I      intronic chr1:6686808(+) A-I      intronic chr1:6686799(+) A-I      intronic chr1:6686795(+) A-I      intronic chr1:6691837(+) A-I      intronic chr1:6686784(+) A-I      intronic chr1:6692165(+) A-I      intronic chr1:6692217(+) A-I      intronic chr1:6693730(+) A-I      intronic chr1:6686750(+) A-I      intronic chr1:6691004(+) A-I      intronic chr1:6692178(+) A-I      intronic chr1:6690730(+) A-I      intronic chr1:6691207(+) A-I      intronic chr1:6691828(+) A-I      intronic chr1:6692012(+) A-I      intronic chr1:6691438(+) A-I      intronic chr1:6691299(+) A-I      intronic chr1:6686840(+) A-I      intronic chr1:6690797(+) A-I      intronic chr1:6691600(+) A-I      intronic chr1:6686772(+) A-I      intronic chr1:6691433(+) A-I      intronic chr1:6691158(+) A-I      intronic chr1:6691177(+) A-I      intronic chr1:6691339(+) A-I      intronic chr1:6686807(+) A-I      intronic chr1:6691736(+) A-I      intronic chr1:6686863(+) A-I      intronic chr1:6687504(+) A-I      intronic chr1:6686852(+) A-I      intronic chr1:6691353(+) A-I      intronic chr1:6687457(+) A-I      intronic chr1:6686747(+) A-I      intronic chr1:6687542(+) A-I      intronic chr1:6691573(+) A-I      intronic chr1:6690796(+) A-I      intronic chr1:6691030(+) A-I      intronic chr1:6686755(+) A-I      intronic chr1:6693983(+) A-I      intronic chr1:6691003(+) A-I      intronic chr1:6691557(+) A-I      intronic chr1:6691351(+) A-I      intronic chr1:6692251(+) A-I      intronic chr1:6691834(+) A-I      intronic chr1:6691031(+) A-I      intronic chr1:6691449(+) A-I      intronic chr1:6690772(+) A-I      intronic chr1:6691512(+) A-I      intronic chr1:6693713(+) A-I      intronic chr1:6691511(+) A-I      intronic chr1:6689211(+) A-I      intronic chr1:6690989(+) A-I      intronic chr1:6691297(+) A-I      intronic chr1:6692155(+) A-I      intronic chr1:6691415(+) A-I      intronic chr1:6686105(+) A-I      intronic chr1:6687550(+) A-I      intronic chr1:6693728(+) A-I      intronic chr1:6690731(+) A-I      intronic chr1:6690893(+) A-I      intronic chr1:6691989(+) A-I      intronic chr1:6692169(+) A-I      intronic chr1:6690696(+) A-I      intronic chr1:6686869(+) A-I      intronic chr1:6690958(+) A-I      intronic chr1:6686232(+) A-I      intronic chr1:6689071(+) A-I      intronic chr1:6687445(+) A-I      intronic chr1:6691089(+) A-I      intronic chr1:6691803(+) A-I      intronic chr1:6691118(+) A-I      intronic chr1:6692241(+) A-I      intronic chr1:6692003(+) A-I      intronic chr1:6691190(+) A-I      intronic chr1:6691487(+) A-I      intronic chr1:6691506(+) A-I      intronic chr1:6691963(+) A-I      intronic chr1:6691973(+) A-I      intronic chr1:6686249(+) A-I      intronic chr1:6691818(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	THAP3	chr1:6686747(+) A-G intron -    22484847 chr1:6686750(+) A-G intron -    22484847 chr1:6686772(+) A-G intron -    22484847 chr1:6687457(+) A-G intron -    22484847 chr1:6690730(+) A-G intron -    22484847 chr1:6690731(+) A-G intron -    22484847 chr1:6690893(+) A-G intron -    22484847 chr1:6691003(+) A-G intron -    22484847 chr1:6691004(+) A-G intron -    22484847 chr1:6691030(+) A-G intron -    22484847 chr1:6691031(+) A-G intron -    22484847 chr1:6691158(+) A-G intron -    22484847 chr1:6691415(+) A-G intron -    22484847 chr1:6691433(+) A-G intron -    22484847 chr1:6691736(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	THAP3	chr1:6687826-6687827(+) m6A exon//intron       24981863 chr1:6688602-6688603(+) m6A CDS//exon//intron       - chr1:6688689-6688690(+) m6A CDS//exon//intron       24284625 chr1:6688698-6688699(+) m6A CDS//exon//intron       24284625 chr1:6688740-6688741(+) m6A CDS//exon//intron       24284625 chr1:6692478-6692479(+) m6A 3'UTR//CDS//exon       24284625 chr1:6692493-6692494(+) m6A 3'UTR//CDS//exon       24284625 chr1:6692499-6692500(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085 chr1:6692551-6692552(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//22608085 chr1:6692560-6692561(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr1:6692588-6692589(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr1:6692609-6692610(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr1:6692620-6692621(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr1:6692642-6692643(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr1:6692924-6692925(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr1:6692967-6692968(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr1:6692974-6692975(+) Y 3'UTR//CDS//exon//intron       26075521 chr1:6692989-6692990(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr1:6693100-6693101(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6693112-6693113(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6693208-6693209(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6693227-6693228(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6693272-6693273(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:6693543-6693544(+) m6A 3'UTR//intron       - chr1:6694401-6694402(+) m6A 3'UTR       - chr1:6694439-6694440(+) m6A 3'UTR       22608085 chr1:6694448-6694449(+) m6A 3'UTR       22608085 chr1:6694461-6694462(+) m6A 3'UTR       24284625//27371828//22608085 chr1:6694663-6694664(+) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085 chr1:6694814-6694815(+) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:6694988-6694989(+) m6A 3'UTR       24284625//25456834//27773535//27371828//27773536//22575960//22608085 chr1:6695167-6695168(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:6695202-6695203(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:6695334-6695335(+) m6A 3'UTR       24284625//27773535//27371828//27773536 chr1:6695383-6695384(+) m6A 3'UTR       24284625//25456834//27773535//27371828//27773536//22575960 chr1:6695393-6695394(+) m6A 3'UTR       24284625//25456834//27773535//27371828//27773536//22575960 chr1:6695405-6695406(+) m6A 3'UTR       24284625//25456834//27773535//27371828//27773536//22575960 chr1:6695445-6695446(+) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:6695483-6695484(+) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:6695499-6695500(+) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:6695643-6695644(+) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	THAP3	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-3p
Interactor2: THAP3

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg