Basic Information:

  VIRBase ID:  

VHID00682274

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:  MIMAT0010151          CDT1:  NM_030928     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-3p	CDT1
miRBase Accession/Entrez ID	MIMAT0010151	81620
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	DUP//RIS2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CDT1	chr16:88875329(+) A-I      3'UTR chr16:88875325(+) A-I      3'UTR chr16:88875171(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CDT1	chr16:88870179-88870180(+) m6A 5'UTR       24981863 chr16:88870445-88870446(+) m6A CDS       24284625//24209618//22575960 chr16:88870983-88870984(+) m6A CDS       24284625//24209618//22575960 chr16:88871070-88871071(+) m6A CDS//exon       24284625//22575960 chr16:88871907-88871908(+) m6A CDS//exon       22575960 chr16:88872936-88872937(+) m6A CDS       24284625 chr16:88874567-88874568(+) m6A CDS       24284625//24209618//24981863 chr16:88874615-88874616(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr16:88874627-88874628(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr16:88874662-88874663(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:88874704-88874705(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:88874761-88874762(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:88874901-88874902(+) m6A 3'UTR       24284625//24209618//24981863 chr16:88875064-88875065(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr16:88875079-88875080(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr16:88875118-88875119(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr16:88875203-88875204(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr16:88875216-88875217(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr16:88875226-88875227(+) m6A 3'UTR       24284625//24209618//24981863 chr16:88875324-88875325(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr16:88875397-88875398(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr16:88875425-88875426(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr16:88875557-88875558(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:88875566-88875567(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:88875590-88875591(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:88875636-88875637(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CDT1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-3p
Interactor2: CDT1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg