Detail Information

Basic Information:


  VIRBase ID:  

VHID00682058

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:           TMUB2:      

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Interactor Information:


Interactor1 Interactor2
Symbol mcpv-miR-P1-3p TMUB2
miRBase
Accession/Entrez ID
MIMAT0010151 79089
Organism Merkel cell polyomavirus Homo sapiens
Category miRNA mRNA
Alias - FP2653

RNA Editing:


Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TMUB2
chr17:42267257(+) C-T intron -    21725310
chr17:42267618(+) G-C intron -    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TMUB2
chr17:42264366-42264367(+) m6A 5'UTR       24981863
chr17:42264371-42264372(+) m6A 5'UTR       24981863
chr17:42264378-42264379(+) m6A 5'UTR       24981863
chr17:42264455-42264456(+) m6A 5'UTR       24981863
chr17:42264644-42264645(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085
chr17:42264705-42264706(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085
chr17:42264732-42264733(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085
chr17:42264748-42264749(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085
chr17:42264775-42264776(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085
chr17:42264805-42264806(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085
chr17:42264829-42264830(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085
chr17:42264840-42264841(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085
chr17:42264854-42264855(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085
chr17:42266526-42266527(+) Y CDS//intron       26075521
chr17:42266532-42266533(+) m6A CDS//intron       25456834//22608085
chr17:42266607-42266608(+) m6A CDS//intron       24284625//25456834//24981863//22575960//22608085
chr17:42266647-42266648(+) m6A CDS//intron       24284625//25456834//24981863//22575960//22608085
chr17:42266709-42266710(+) m6A CDS//intron       24284625//25456834//24981863//22608085
chr17:42266791-42266792(+) m6A CDS//intron       24284625//25456834
chr17:42267032-42267033(+) m6A 3'UTR//intron       24284625
chr17:42267707-42267708(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr17:42267883-42267884(+) m6A 3'UTR//CDS       24284625//24981863//22608085
chr17:42267901-42267902(+) m6A 3'UTR//CDS       24284625//24981863//22608085
chr17:42267930-42267931(+) m6A 3'UTR//CDS       24284625//24981863//26404942//22608085
chr17:42267957-42267958(+) m6A 3'UTR//CDS       24284625//24981863//26404942//22608085
chr17:42268234-42268235(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chr17:42268361-42268362(+) m6A 3'UTR//intron       24209618//24981863
chr17:42268691-42268692(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TMUB2
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: mcpv-miR-P1-3p
Interactor2: TMUB2

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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