Basic Information:

  VIRBase ID:  

VHID00681866

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:  MIMAT0010151          IGDCC4:  NM_020962     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-3p	IGDCC4
miRBase Accession/Entrez ID	MIMAT0010151	57722
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	DDM36//NOPE

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	IGDCC4	chr15:65707117(-) A-I      intronic chr15:65707316(-) A-I      intronic chr15:65705204(-) A-I      intronic chr15:65705083(-) A-I      intronic chr15:65699766(-) A-I      intronic chr15:65705183(-) A-I      intronic chr15:65705053(-) A-I      intronic chr15:65700103(-) A-I      intronic chr15:65700102(-) A-I      intronic chr15:65705020(-) A-I      intronic chr15:65699773(-) A-I      intronic chr15:65700097(-) A-I      intronic chr15:65679457(-) A-I      intronic chr15:65704481(-) A-I      intronic chr15:65680282(-) A-I      intronic chr15:65712423(-) A-I      intronic chr15:65704456(-) A-I      intronic chr15:65705213(-) A-I      intronic chr15:65707076(-) A-I      intronic chr15:65711487(-) A-I      intronic chr15:65704367(-) A-I      intronic chr15:65679854(-) A-I      intronic chr15:65701178(-) A-I      intronic chr15:65679443(-) A-I      intronic chr15:65705067(-) A-I      intronic chr15:65697241(-) A-I      intronic chr15:65697384(-) A-I      intronic chr15:65707118(-) A-I      intronic chr15:65704475(-) A-I      intronic chr15:65710019(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	IGDCC4	chr15:65674702-65674703(-) m6A 3'UTR//exon       24981863 chr15:65675529-65675530(-) m6A 3'UTR//exon       27773535 chr15:65675562-65675563(-) m6A 3'UTR//exon       27773535 chr15:65676065-65676066(-) m6A 3'UTR//exon       24981863 chr15:65676131-65676132(-) m6A 3'UTR//exon       24981863//22608085 chr15:65676140-65676141(-) m6A 3'UTR//exon       24981863//22608085 chr15:65676196-65676197(-) m6A 3'UTR//exon       24981863//22608085 chr15:65676435-65676436(-) m6A CDS//exon       25456834//24981863//27773536 chr15:65676464-65676465(-) m6A CDS//exon       25456834//24981863//27773536//22608085 chr15:65676515-65676516(-) m6A CDS//exon       25456834//24981863//27773536//22608085 chr15:65676557-65676558(-) m6A CDS//exon       25456834//24981863//27773536 chr15:65676629-65676630(-) m6A CDS//exon       25456834//24981863//27773536 chr15:65676644-65676645(-) m6A CDS//exon       25456834//24981863//27773536 chr15:65676665-65676666(-) m6A CDS//exon       25456834 chr15:65677338-65677339(-) m6A CDS//exon       27773536 chr15:65677806-65677807(-) m6A exon//intron       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	IGDCC4	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-3p
Interactor2: IGDCC4

Evidence Support:

Prediction-Evidence	miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg