Basic Information:

  VIRBase ID:  

VHID00681748

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:  MIMAT0010151          ATP13A1:  NM_020410     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-3p	ATP13A1
miRBase Accession/Entrez ID	MIMAT0010151	57130
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	ATP13A//CGI-152

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ATP13A1	chr19:19760039(-) A-I      intronic chr19:19760028(-) A-I      intronic chr19:19759532(-) A-I      intronic chr19:19759502(-) A-I      intronic chr19:19759990(-) A-I      intronic chr19:19760102(-) A-I      intronic chr19:19759809(-) A-I      intronic chr19:19759962(-) A-I      intronic chr19:19760082(-) A-I      intronic chr19:19760009(-) A-I      intronic chr19:19759045(-) A-I      intronic chr19:19759963(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ATP13A1	chr19:19759967(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ATP13A1	chr19:19756060-19756061(-) m6A 3'UTR//exon       27773535 chr19:19756094-19756095(-) m6A 3'UTR//exon       27773535 chr19:19756105-19756106(-) m6A 3'UTR//exon       27773535 chr19:19756156-19756157(-) m6A 3'UTR//exon       27773535 chr19:19756180-19756181(-) m6A 3'UTR//exon       24284625//27773535 chr19:19756256-19756257(-) m6A CDS//exon       24284625//27773535 chr19:19756306-19756307(-) m6A CDS//exon       24284625//27773535 chr19:19756567-19756568(-) m6A CDS//exon       27773535 chr19:19756659-19756660(-) m6A exon//intron       27773535 chr19:19756776-19756777(-) m6A CDS//exon       27773535 chr19:19757146-19757147(-) m6A CDS//exon       24284625//24981863//27773535 chr19:19758280-19758281(-) m6A CDS//exon       - chr19:19758311-19758312(-) m6A CDS//exon       - chr19:19758335-19758336(-) m6A CDS//exon       - chr19:19758463-19758464(-) m6A CDS//exon       24284625 chr19:19758507-19758508(-) m6A CDS//exon       24284625 chr19:19761154-19761155(-) m6A exon//intron       27773536 chr19:19761200-19761201(-) m6A exon//intron       24284625//27773536 chr19:19762586-19762587(-) m6A CDS//exon       24284625 chr19:19763561-19763562(-) m6A exon//intron       24284625 chr19:19764791-19764792(-) m6A CDS//exon       27773535 chr19:19764923-19764924(-) m6A CDS//exon//intron       22575960 chr19:19765353-19765354(-) Am CDS//exon       - chr19:19765368-19765369(-) m6A CDS//exon       22575960 chr19:19765470-19765471(-) Y CDS//exon       25219674//26075521 chr19:19766240-19766241(-) m6A CDS//exon       - chr19:19766252-19766253(-) m6A CDS//exon       - chr19:19766402-19766403(-) m6A CDS//exon       27371828//27773536 chr19:19766413-19766414(-) m6A CDS//exon       27371828//27773536 chr19:19766706-19766707(-) m6A CDS//exon       27371828//27773536 chr19:19766954-19766955(-) m6A CDS//exon       27773535//27371828//27773536 chr19:19766966-19766967(-) m6A CDS//exon       27773535//27371828//27773536 chr19:19766978-19766979(-) m6A CDS//exon       27773535//27371828//27773536 chr19:19767556-19767557(-) m6A CDS//exon       27371828 chr19:19767669-19767670(-) m6A CDS//exon       27371828 chr19:19767784-19767785(-) m6A exon//intron       - chr19:19769049-19769050(-) Cm intron       - chr19:19770451-19770452(-) m6A CDS//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ATP13A1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-3p
Interactor2: ATP13A1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg