Detail Information

Basic Information:


  VIRBase ID:  

VHID00681655

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:           PAG1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcpv-miR-P1-3p PAG1
miRBase
Accession/Entrez ID		 MIMAT0010151 55824
Organism Merkel cell polyomavirus Homo sapiens
Category miRNA mRNA
Alias - CBP//PAG

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PAG1
chr8:82019842(-) A-I      intronic
chr8:81938483(-) A-I      intronic
chr8:81938507(-) A-I      intronic
chr8:81939313(-) A-I      intronic
chr8:81939343(-) A-I      intronic
chr8:81939361(-) A-I      intronic
chr8:81939433(-) A-I      intronic
chr8:81939951(-) A-I      intronic
chr8:81939959(-) A-I      intronic
chr8:81940016(-) A-I      intronic
chr8:81940028(-) A-I      intronic
chr8:81940138(-) A-I      intronic
chr8:81967481(-) A-I      intronic
chr8:81975011(-) A-I      intronic
chr8:81975016(-) A-I      intronic
chr8:81984892(-) A-I      intronic
chr8:81980391(-) A-I      intronic
chr8:81966848(-) A-I      intronic
chr8:81938552(-) A-I      intronic
chr8:81938577(-) A-I      intronic
chr8:81939331(-) A-I      intronic
chr8:81939479(-) A-I      intronic
chr8:81967391(-) A-I      intronic
chr8:81939406(-) A-I      intronic
chr8:81939532(-) A-I      intronic
chr8:81939512(-) A-I      intronic
chr8:82004344(-) A-I      intronic
chr8:81939360(-) A-I      intronic
chr8:81938547(-) A-I      intronic
chr8:81967390(-) A-I      intronic
chr8:81939384(-) A-I      intronic
chr8:81938526(-) A-I      intronic
chr8:81939453(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PAG1
chr8:81938552(-) A-G intron -    22484847
chr8:81938577(-) A-G intron -    22484847
chr8:81939299(-) C-T intron -    22484847
chr8:81939360(-) A-G intron -    22484847
chr8:81939384(-) A-G intron -    22484847
chr8:81939405(-) A-G intron -    22484847
chr8:81939406(-) A-G intron -    22484847
chr8:81939453(-) A-G intron -    22484847
chr8:81939455(-) A-G intron -    22484847
chr8:81939479(-) A-G intron -    22484847
chr8:81939512(-) A-G intron -    22484847
chr8:81939532(-) A-G intron -    22484847
chr8:81980391(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PAG1
chr8:81884784-81884785(-) m6A 3'UTR//intron       27773535
chr8:81884815-81884816(-) m6A 3'UTR//intron       27773535
chr8:81887733-81887734(-) m6A 3'UTR//intron       27773535
chr8:81887833-81887834(-) m6A 3'UTR//exon       24981863//26404942//27773535//22608085
chr8:81887881-81887882(-) m6A 3'UTR//exon       24981863//26404942//27773535//22608085
chr8:81887887-81887888(-) m6A 3'UTR//exon       24981863//26404942//27773535//22608085
chr8:81887914-81887915(-) m6A 3'UTR//exon       24981863//26404942//27773535//22608085
chr8:81887929-81887930(-) m6A 3'UTR//exon       24981863//26404942//27773535//22608085
chr8:81887946-81887947(-) m6A 3'UTR//exon       24981863//26404942//27773535//22608085
chr8:81887996-81887997(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr8:81888166-81888167(-) m6A 3'UTR       -
chr8:81888239-81888240(-) m6A 3'UTR       27773535
chr8:81888436-81888437(-) m6A 3'UTR       24981863//27773535//27371828//22608085
chr8:81888560-81888561(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:81888599-81888600(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:81888613-81888614(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr8:81888698-81888699(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22575960//22608085
chr8:81888766-81888767(-) m6A 3'UTR       24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr8:81888867-81888868(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:81888903-81888904(-) m6A CDS       24284625//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:81888968-81888969(-) m6A CDS       24981863//27773535//27371828//22608085
chr8:81888975-81888976(-) m6A CDS       24981863//27773535//27371828//22608085
chr8:81888986-81888987(-) m6A CDS       24981863//27773535//27371828//22608085
chr8:81889037-81889038(-) m6A CDS       24981863//27773535//27371828//22608085
chr8:81889105-81889106(-) m6A CDS       24981863//27773535//27371828//22608085
chr8:81889111-81889112(-) m6A CDS       24981863//27773535//27371828//22608085
chr8:81892691-81892692(-) m6A CDS       27773535//27371828//22608085
chr8:81897018-81897019(-) m6A CDS       27773535//27371828//22608085
chr8:81897032-81897033(-) m6A CDS       27773535//27371828//22608085
chr8:81897077-81897078(-) m6A CDS       27773535//27371828//22608085
chr8:81897188-81897189(-) m6A CDS       24981863//28052920//26404942//27773535//27371828//22608085
chr8:81897194-81897195(-) m6A CDS       24981863//28052920//26404942//27773535//27371828//22608085
chr8:81897234-81897235(-) m6A CDS       24284625//24981863//28052920//26404942//27773535//27371828//27773536//22608085
chr8:81897339-81897340(-) m6A CDS       24284625//24981863//28052920//26404942//27773535//27371828//27773536//22608085
chr8:81897353-81897354(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr8:81897365-81897366(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr8:81897383-81897384(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr8:81897425-81897426(-) m6A CDS       25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr8:81897514-81897515(-) m6A CDS//exon       24981863//27773535//27371828//27773536//22608085
chr8:81897527-81897528(-) m6A CDS//exon       27773535//27371828//27773536//22608085
chr8:81897558-81897559(-) m6A CDS//exon       27371828//27773536//22608085
chr8:81897599-81897600(-) m6A CDS//exon       27371828//27773536//22608085
chr8:81899606-81899607(-) m6A CDS//exon       27371828//27773536//22608085
chr8:81899693-81899694(-) m6A CDS//exon       -
chr8:81903726-81903727(-) m6A CDS       -
chr8:81942247-81942248(-) m6A 5'UTR//exon       27773535
chr8:81942266-81942267(-) m6A 5'UTR//exon       27773535
chr8:81942305-81942306(-) m6A 5'UTR//exon       27773535
chr8:81982401-81982402(-) m6A 5'UTR//exon       27773535
chr8:82023846-82023847(-) m6A 5'UTR       27773536
chr8:82024125-82024126(-) m6A 5'UTR       27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PAG1
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: mcpv-miR-P1-3p
Interactor2: PAG1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Targetscan
Support Database RepTar//VmiReg

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