Basic Information:

  VIRBase ID:  

VHID00681501

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:  MIMAT0010151          RALGPS2:  NM_001286247     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-3p	RALGPS2
miRBase Accession/Entrez ID	MIMAT0010151	55103
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	dJ595C2.1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RALGPS2	chr1:178817262(+) A-I      intronic chr1:179048223(+) A-I      intronic chr1:179048234(+) A-I      intronic chr1:179048252(+) A-I      intronic chr1:178956252(+) A-I      intronic chr1:178956270(+) A-I      intronic chr1:178897222(+) A-I      intronic chr1:178987528(+) A-I      intronic chr1:178956287(+) A-I      intronic chr1:178956284(+) A-I      intronic chr1:178956281(+) A-I      intronic chr1:178987535(+) A-I      intronic chr1:179047736(+) A-I      intronic chr1:178956278(+) A-I      intronic chr1:178987462(+) A-I      intronic chr1:178956276(+) A-I      intronic chr1:178956246(+) A-I      intronic chr1:178713821(+) A-I      intronic chr1:178713831(+) A-I      intronic chr1:178713880(+) A-I      intronic chr1:178783698(+) A-I      intronic chr1:178783704(+) A-I      intronic chr1:178783710(+) A-I      intronic chr1:178786077(+) A-I      intronic chr1:178786086(+) A-I      intronic chr1:178786104(+) A-I      intronic chr1:178786105(+) A-I      intronic chr1:178786285(+) A-I      intronic chr1:178786319(+) A-I      intronic chr1:178786328(+) A-I      intronic chr1:178786334(+) A-I      intronic chr1:178786359(+) A-I      intronic chr1:178786360(+) A-I      intronic chr1:178786392(+) A-I      intronic chr1:178788203(+) A-I      intronic chr1:178817243(+) A-I      intronic chr1:178817257(+) A-I      intronic chr1:178817258(+) A-I      intronic chr1:178897171(+) A-I      intronic chr1:178817273(+) A-I      intronic chr1:178817287(+) A-I      intronic chr1:178817295(+) A-I      intronic chr1:178817299(+) A-I      intronic chr1:178956201(+) A-I      intronic chr1:179046179(+) A-I      intronic chr1:179046187(+) A-I      intronic chr1:179046209(+) A-I      intronic chr1:179047781(+) A-I      intronic chr1:179048173(+) A-I      intronic chr1:179048182(+) A-I      intronic chr1:179048189(+) A-I      intronic chr1:179048210(+) A-I      intronic chr1:178707097(+) A-I      intronic chr1:178713832(+) A-I      intronic chr1:178713837(+) A-I      intronic chr1:178713845(+) A-I      intronic chr1:178715074(+) A-I      intronic chr1:178715083(+) A-I      intronic chr1:178715086(+) A-I      intronic chr1:178715096(+) A-I      intronic chr1:178719002(+) A-I      intronic chr1:178719187(+) A-I      intronic chr1:178719201(+) A-I      intronic chr1:178730174(+) A-I      intronic chr1:178730715(+) A-I      intronic chr1:178730789(+) A-I      intronic chr1:178730795(+) A-I      intronic chr1:178730796(+) A-I      intronic chr1:178735586(+) A-I      intronic chr1:178740113(+) A-I      intronic chr1:178740208(+) A-I      intronic chr1:178740250(+) A-I      intronic chr1:178742744(+) A-I      intronic chr1:178763442(+) A-I      intronic chr1:178764138(+) A-I      intronic chr1:178764168(+) A-I      intronic chr1:178776356(+) A-I      intronic chr1:178778023(+) A-I      intronic chr1:178782087(+) A-I      intronic chr1:178783846(+) A-I      intronic chr1:178786054(+) A-I      intronic chr1:178786090(+) A-I      intronic chr1:178786294(+) A-I      intronic chr1:178786315(+) A-I      intronic chr1:178786318(+) A-I      intronic chr1:178786329(+) A-I      intronic chr1:178786373(+) A-I      intronic chr1:178786376(+) A-I      intronic chr1:178786395(+) A-I      intronic chr1:178787240(+) A-I      intronic chr1:178787262(+) A-I      intronic chr1:178788224(+) A-I      intronic chr1:178788236(+) A-I      intronic chr1:178788380(+) A-I      intronic chr1:178843077(+) A-I      intronic chr1:178844792(+) A-I      intronic chr1:178850611(+) A-I      intronic chr1:178850646(+) A-I      intronic chr1:178850689(+) A-I      intronic chr1:178850690(+) A-I      intronic chr1:178850703(+) A-I      intronic chr1:178850725(+) A-I      intronic chr1:178909967(+) A-I      intronic chr1:178910009(+) A-I      intronic chr1:178910020(+) A-I      intronic chr1:178910785(+) A-I      intronic chr1:179046223(+) A-I      intronic chr1:178705560(+) A-I      intronic chr1:179046352(+) A-I      intronic chr1:179046479(+) A-I      intronic chr1:179047596(+) A-I      intronic chr1:179047657(+) A-I      intronic chr1:179047686(+) A-I      intronic chr1:179048049(+) A-I      intronic chr1:179048073(+) A-I      intronic chr1:179048093(+) A-I      intronic chr1:179048167(+) A-I      intronic chr1:179048197(+) A-I      intronic chr1:178705414(+) A-I      intronic chr1:179047682(+) A-I      intronic chr1:178706974(+) A-I      intronic chr1:178706982(+) A-I      intronic chr1:178788318(+) A-I      intronic chr1:179047584(+) A-I      intronic chr1:178956220(+) A-I      intronic chr1:178778219(+) A-I      intronic chr1:178910767(+) A-I      intronic chr1:178910943(+) A-I      intronic chr1:178788227(+) A-I      intronic chr1:178786325(+) A-I      intronic chr1:178843096(+) A-I      intronic chr1:178973914(+) A-I      intronic chr1:178817885(+) A-I      intronic chr1:178814037(+) A-I      intronic chr1:179048094(+) A-I      intronic chr1:179047791(+) A-I      intronic chr1:179047653(+) A-I      intronic chr1:179046551(+) A-I      intronic chr1:179046317(+) A-I      intronic chr1:178909920(+) A-I      intronic chr1:178783862(+) A-I      intronic chr1:178844824(+) A-I      intronic chr1:178844627(+) A-I      intronic chr1:179048235(+) A-I      intronic chr1:178910832(+) A-I      intronic chr1:179048120(+) A-I      intronic chr1:179046346(+) A-I      intronic chr1:179048123(+) A-I      intronic chr1:179046323(+) A-I      intronic chr1:178707042(+) A-I      intronic chr1:179048850(+) A-I      intronic chr1:179048262(+) A-I      intronic chr1:179047778(+) A-I      intronic chr1:178817851(+) A-I      intronic chr1:178818000(+) A-I      intronic chr1:178817283(+) A-I      intronic chr1:178897187(+) A-I      intronic chr1:179046587(+) A-I      intronic chr1:178816461(+) A-I      intronic chr1:179048080(+) A-I      intronic chr1:179049726(+) A-I      intronic chr1:178769749(+) A-I      intronic chr1:178707618(+) A-I      intronic chr1:178707612(+) A-I      intronic chr1:179046469(+) A-I      intronic chr1:178804730(+) A-I      intronic chr1:178764100(+) A-I      intronic chr1:178909956(+) A-I      intronic chr1:178705506(+) A-I      intronic chr1:178713867(+) A-I      intronic chr1:178730721(+) A-I      intronic chr1:178910867(+) A-I      intronic chr1:178818039(+) A-I      intronic chr1:178792219(+) A-I      intronic chr1:179047633(+) A-I      intronic chr1:178764113(+) A-I      intronic chr1:179047646(+) A-I      intronic chr1:179048046(+) A-I      intronic chr1:178799009(+) A-I      intronic chr1:178715209(+) A-I      intronic chr1:179048883(+) A-I      intronic chr1:178705838(+) A-I      intronic chr1:178721400(+) A-I      intronic chr1:179046210(+) A-I      intronic chr1:178817296(+) A-I      intronic chr1:178742138(+) A-I      intronic chr1:179047818(+) A-I      intronic chr1:178897221(+) A-I      intronic chr1:179046318(+) A-I      intronic chr1:178706936(+) A-I      intronic chr1:178788405(+) A-I      intronic chr1:178711109(+) A-I      intronic chr1:178707483(+) A-I      intronic chr1:179048221(+) A-I      intronic chr1:178785900(+) A-I      intronic chr1:178707606(+) A-I      intronic chr1:178817930(+) A-I      intronic chr1:179046541(+) A-I      intronic chr1:179047656(+) A-I      intronic chr1:178793949(+) A-I      intronic chr1:178817809(+) A-I      intronic chr1:178705915(+) A-I      intronic chr1:179047577(+) A-I      intronic chr1:179047733(+) A-I      intronic chr1:178786330(+) A-I      intronic chr1:178705799(+) A-I      intronic chr1:178713910(+) A-I      intronic chr1:179046342(+) A-I      intronic chr1:178844628(+) A-I      intronic chr1:178817831(+) A-I      intronic chr1:178705572(+) A-I      intronic chr1:179046480(+) A-I      intronic chr1:179048261(+) A-I      intronic chr1:178909906(+) A-I      intronic chr1:178817279(+) A-I      intronic chr1:178735547(+) A-I      intronic chr1:179046603(+) A-I      intronic chr1:178787348(+) A-I      intronic chr1:178799019(+) A-I      intronic chr1:178788402(+) A-I      intronic chr1:178783820(+) A-I      intronic chr1:178788241(+) A-I      intronic chr1:178936285(+) A-I      intronic chr1:178712210(+) A-I      intronic chr1:178719185(+) A-I      intronic chr1:178730918(+) A-I      intronic chr1:178844636(+) A-I      intronic chr1:179048127(+) A-I      intronic chr1:178705889(+) A-I      intronic chr1:179047755(+) A-I      intronic chr1:178783861(+) A-I      intronic chr1:178792218(+) A-I      intronic chr1:178707052(+) A-I      intronic chr1:178792054(+) A-I      intronic chr1:178792209(+) A-I      intronic chr1:179047718(+) A-I      intronic chr1:178705494(+) A-I      intronic chr1:178730173(+) A-I      intronic chr1:178742405(+) A-I      intronic chr1:178817819(+) A-I      intronic chr1:179048928(+) A-I      intronic chr1:178844025(+) A-I      intronic chr1:178706969(+) A-I      intronic chr1:179046228(+) A-I      intronic chr1:178786369(+) A-I      intronic chr1:178764773(+) A-I      intronic chr1:178788201(+) A-I      intronic chr1:179047792(+) A-I      intronic chr1:178786237(+) A-I      intronic chr1:178712294(+) A-I      intronic chr1:178816434(+) A-I      intronic chr1:178816431(+) A-I      intronic chr1:178778055(+) A-I      intronic chr1:178910932(+) A-I      intronic chr1:178843093(+) A-I      intronic chr1:178783775(+) A-I      intronic chr1:179047777(+) A-I      intronic chr1:179049729(+) A-I      intronic chr1:178778220(+) A-I      intronic chr1:179047608(+) A-I      intronic chr1:179046188(+) A-I      intronic chr1:178817807(+) A-I      intronic chr1:178715060(+) A-I      intronic chr1:179048203(+) A-I      intronic chr1:178956222(+) A-I      intronic chr1:178816509(+) A-I      intronic chr1:179046540(+) A-I      intronic chr1:178844815(+) A-I      intronic chr1:178843060(+) A-I      intronic chr1:178844785(+) A-I      intronic chr1:178786337(+) A-I      intronic chr1:178814170(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RALGPS2	chr1:178698804(+) A-I intron -    21960545 chr1:178705326(+) A-I intron -    21960545 chr1:178705480(+) A-I intron -    21960545 chr1:178706982(+) A-I intron -    21960545 chr1:178712689(+) A-I intron -    21960545 chr1:178730203(+) A-I intron -    21960545 chr1:178767260(+) A-I intron -    21960545 chr1:178767531(+) A-I intron -    21960545 chr1:178769671(+) A-I intron -    21960545 chr1:178769672(+) A-I intron -    21960545 chr1:178771310(+) A-I intron -    21960545 chr1:178771820(+) A-I intron -    21960545 chr1:178787348(+) A-I intron -    21960545 chr1:178844785(+) A-I intron -    21960545 chr1:178769749(+) A-G intron -    22484847 chr1:178705506(+) A-G intron -    22484847 chr1:178705572(+) A-G intron -    22484847 chr1:178705838(+) A-G intron -    22484847 chr1:178705889(+) A-G intron -    22484847 chr1:178705915(+) A-G intron -    22484847 chr1:178706936(+) A-G intron -    22484847 chr1:178707042(+) A-G intron -    22484847 chr1:178707052(+) A-G intron -    22484847 chr1:178711109(+) A-G intron -    22484847 chr1:178715060(+) A-G intron -    22484847 chr1:178764100(+) A-G intron -    22484847 chr1:178764113(+) A-G intron -    22484847 chr1:178764773(+) A-G intron -    22484847 chr1:178785900(+) A-G intron -    22484847 chr1:178786330(+) A-G intron -    22484847 chr1:178786337(+) A-G intron -    22484847 chr1:178788227(+) A-G intron -    22484847 chr1:178788241(+) A-G intron -    22484847 chr1:178788318(+) A-G intron -    22484847 chr1:178792209(+) A-G intron -    22484847 chr1:178792218(+) A-G intron -    22484847 chr1:178792219(+) A-G intron -    22484847 chr1:178817283(+) A-G intron -    22484847 chr1:178817885(+) A-G intron -    22484847 chr1:178843093(+) A-G intron -    22484847 chr1:178843096(+) A-G intron -    22484847 chr1:178844824(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RALGPS2	chr1:178871308-178871309(+) m6A CDS//exon       24284625 chr1:178875995-178875996(+) m6A CDS//exon       24284625//24209618//24981863//22608085 chr1:178885474-178885475(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr1:178885519-178885520(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:178885545-178885546(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:178885571-178885572(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:178885674-178885675(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:178885692-178885693(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:178885706-178885707(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:178885726-178885727(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:178885740-178885741(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:178885768-178885769(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:178885779-178885780(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:178885825-178885826(+) Tm 3'UTR       - chr1:178885914-178885915(+) m6A 3'UTR       24284625//24981863//22608085 chr1:178885951-178885952(+) m6A 3'UTR       24981863 chr1:178885965-178885966(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RALGPS2	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-3p
Interactor2: RALGPS2

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg