Detail Information

Basic Information:


  VIRBase ID:  

VHID00681490

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:           PTCD3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcpv-miR-P1-3p PTCD3
miRBase
Accession/Entrez ID		 MIMAT0010151 55037
Organism Merkel cell polyomavirus Homo sapiens
Category miRNA mRNA
Alias - COXPD51//MRP-S39

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PTCD3
chr2:86355298(+) A-I      intronic
chr2:86339737(+) A-I      intronic
chr2:86338524(+) A-I      intronic
chr2:86338495(+) A-I      intronic
chr2:86338590(+) A-I      intronic
chr2:86338561(+) A-I      intronic
chr2:86338545(+) A-I      intronic
chr2:86338551(+) A-I      intronic
chr2:86338591(+) A-I      intronic
chr2:86338596(+) A-I      intronic
chr2:86338783(+) A-I      intronic
chr2:86339067(+) A-I      intronic
chr2:86339101(+) A-I      intronic
chr2:86343517(+) A-I      intronic
chr2:86339127(+) A-I      intronic
chr2:86339128(+) A-I      intronic
chr2:86339129(+) A-I      intronic
chr2:86339273(+) A-I      intronic
chr2:86339368(+) A-I      intronic
chr2:86339410(+) A-I      intronic
chr2:86339628(+) A-I      intronic
chr2:86338528(+) A-I      intronic
chr2:86338494(+) A-I      intronic
chr2:86366368(+) A-I      3'UTR
chr2:86339698(+) A-I      intronic
chr2:86340780(+) A-I      intronic
chr2:86349677(+) A-I      intronic
chr2:86357329(+) A-I      intronic
chr2:86356644(+) A-I      intronic
chr2:86347740(+) A-I      intronic
chr2:86350305(+) A-I      intronic
chr2:86355305(+) A-I      intronic
chr2:86356535(+) A-I      intronic
chr2:86357262(+) A-I      intronic
chr2:86355322(+) A-I      intronic
chr2:86356540(+) A-I      intronic
chr2:86338968(+) A-I      intronic
chr2:86366514(+) A-I      3'UTR
chr2:86366789(+) A-I      3'UTR
chr2:86366543(+) A-I      3'UTR
chr2:86366654(+) A-I      3'UTR
chr2:86366362(+) A-I      3'UTR
chr2:86366442(+) A-I      3'UTR
chr2:86339361(+) A-I      intronic
chr2:86353075(+) A-I      intronic
chr2:86338924(+) A-I      intronic
chr2:86347853(+) A-I      intronic
chr2:86358601(+) A-I      intronic
chr2:86353206(+) A-I      intronic
chr2:86357308(+) A-I      intronic
chr2:86340883(+) A-I      intronic
chr2:86349629(+) A-I      intronic
chr2:86355336(+) A-I      intronic
chr2:86349674(+) A-I      intronic
chr2:86338652(+) A-I      intronic
chr2:86353905(+) A-I      intronic
chr2:86349574(+) A-I      intronic
chr2:86357302(+) A-I      intronic
chr2:86355416(+) A-I      intronic
chr2:86355352(+) A-I      intronic
chr2:86339712(+) A-I      intronic
chr2:86341593(+) A-I      intronic
chr2:86340764(+) A-I      intronic
chr2:86339684(+) A-I      intronic
chr2:86339575(+) A-I      intronic
chr2:86353090(+) A-I      intronic
chr2:86339754(+) A-I      intronic
chr2:86356730(+) A-I      intronic
chr2:86356539(+) A-I      intronic
chr2:86357344(+) A-I      intronic
chr2:86350306(+) A-I      intronic
chr2:86346679(+) A-I      ncRNA
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PTCD3
chr2:86336529(+) C-A intron -    22484847
chr2:86338652(+) A-G intron -    22484847
chr2:86338968(+) A-G intron -    22484847
chr2:86339361(+) A-G intron -    22484847
chr2:86339618(+) A-G intron -    22484847
chr2:86339684(+) A-G intron -    22484847
chr2:86339698(+) A-G intron -    22484847
chr2:86339712(+) A-G intron -    22484847
chr2:86347740(+) A-G intron -    22484847
chr2:86349566(+) A-G intron -    22484847
chr2:86349604(+) A-G intron -    22484847
chr2:86349674(+) A-G intron -    22484847
chr2:86349677(+) A-G intron -    22484847
chr2:86349709(+) T-G intron -    22484847
chr2:86350264(+) A-G intron -    22484847
chr2:86353278(+) G-A intron -    22484847
chr2:86355319(+) A-G intron -    22484847
chr2:86355320(+) A-G intron -    22484847
chr2:86355322(+) A-G intron -    22484847
chr2:86355336(+) A-G intron -    22484847
chr2:86356535(+) A-G intron -    22484847
chr2:86356539(+) A-G intron -    22484847
chr2:86366362(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PTCD3
chr2:86333456-86333457(+) m6A CDS//exon       24981863//22608085
chr2:86334259-86334260(+) m6A CDS//intron       24981863
chr2:86334283-86334284(+) m6A CDS//intron       24981863
chr2:86335512-86335513(+) m6A CDS//exon       24981863
chr2:86335631-86335632(+) m1A 3'UTR//CDS//exon       26863196
chr2:86335654-86335655(+) m6A 3'UTR//CDS//exon       -
chr2:86364130-86364131(+) m6A CDS       -
chr2:86364257-86364258(+) m6A CDS       -
chr2:86364741-86364742(+) m6A 3'UTR       24981863//26404942//27773535//22608085
chr2:86365192-86365193(+) m6A 3'UTR       27773535
chr2:86367954-86367955(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chr2:86367994-86367995(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr2:86368018-86368019(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr2:86368044-86368045(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr2:86368053-86368054(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr2:86368068-86368069(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr2:86368084-86368085(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr2:86368190-86368191(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chr2:86368292-86368293(+) m6A 3'UTR       24284625//24981863//22608085
chr2:86368303-86368304(+) m6A 3'UTR       24284625//24981863//22608085
chr2:86368312-86368313(+) m6A 3'UTR       24284625//24981863//22608085
chr2:86368425-86368426(+) m6A 3'UTR       24284625//24981863//22608085
chr2:86368440-86368441(+) m6A 3'UTR       24284625//24981863//22608085
chr2:86368474-86368475(+) m6A 3'UTR       24284625//24981863//22608085
chr2:86368579-86368580(+) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:86368602-86368603(+) m6A 3'UTR       24981863//27773535//22608085
chr2:86368610-86368611(+) m6A 3'UTR       24981863//27773535//22608085
chr2:86368626-86368627(+) m6A 3'UTR       24981863//27773535//22608085
chr2:86368639-86368640(+) m6A 3'UTR       24981863//27773535//22608085
chr2:86368686-86368687(+) m6A 3'UTR       24981863//27773535//22608085
chr2:86368734-86368735(+) m6A 3'UTR       27773535//22608085
chr2:86368778-86368779(+) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PTCD3
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus HCC cell line (HepG2)|K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: mcpv-miR-P1-3p
Interactor2: PTCD3

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Targetscan
Support Database RepTar//VmiReg

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